Histone_ChIP-seq_ENCSR741HEF
Histone_ChIP-seq ENCSR741HEF [biosample_summary="Homo sapiens heart right ventricle tissue male adult (61 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR741HEF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR741HEF [biosamplesummary="Homo sapiens heart right ventricle tissue male adult (61 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (61 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN403ZLO|/analyses/ENCAN403ZLO/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF105YBO|/files/ENCFF105YBO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF105YBO|/files/ENCFF105YBO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.49. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR741HEF | float |
Histone_ChIP-seq_ENCSR741HEF |
Histone_ChIP-seq ENCSR741HEF [biosample_summary="Homo sapiens heart right ventricle tissue male adult (61 years)" and target="H3K27ac"]
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[1.65, 35.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF329CDU.bed.gz | 897.57 KB | 89bac7911b697ba063a5897c1aae88c6 |
| ENCFF329CDU.bed.gz.dvc | 100.0 B | f056de3e95451f52fdac9b5cb02a11a2 |
| ENCFF329CDU.tabix.bed.gz | 396.35 KB | d211bad08bda52378f7a744222a4cc7a |
| ENCFF329CDU.tabix.bed.gz.dvc | 106.0 B | 3ea22c2d5bbb4a4edc791955ba95c834 |
| ENCFF329CDU.tabix.bed.gz.tbi | 165.4 KB | abfd6d04c8a6bd9521210bd61a9b1aab |
| ENCFF329CDU.tabix.bed.gz.tbi.dvc | 110.0 B | 59d1befaba5c8cac07950bbc4c9cd791 |
| genomic_resource.yaml | 2.79 KB | a5e27b598821e9f3950a0acbe04a1e42 |
| genomic_resource_original.yaml | 2.65 KB | 6b98a8a77186f07884e4c470e31b8371 |
| statistics/ |