Resource
| Id | Histone_ChIP-seq/ENCSR741GJT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR741GJT [biosample_summary="Homo sapiens ACC112" and target="H3K79me2"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN816KMV|/analyses/ENCAN816KMV/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN816KMV|/analyses/ENCAN816KMV/} has in progress subobject document {ce922f7f-77dc-45dd-bfeb-5cb81b612bee|/documents/ce922f7f-77dc-45dd-bfeb-5cb81b612bee/} audit_not_compliant: Processed alignments file {ENCFF360KGW|/files/ENCFF360KGW/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 23840389 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR741GJT | float |
Histone_ChIP-seq_ENCSR741GJT |
Histone_ChIP-seq ENCSR741GJT [biosample_summary="Homo sapiens ACC112" and target="H3K79me2"]
|
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[1.87, 25.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 108070467 | 3.36% | 109782 |
| chr1 | 10505965 | 4.22% | 10407 |
| chr2 | 9176896 | 3.79% | 8824 |
| chr3 | 7797152 | 3.93% | 7717 |
| chr4 | 5053823 | 2.66% | 5388 |
| chr5 | 6098674 | 3.36% | 5973 |
| chr6 | 5592970 | 3.27% | 5746 |
| chr7 | 5633130 | 3.54% | 5930 |
| chr8 | 4483677 | 3.09% | 4329 |
| chr9 | 4785377 | 3.46% | 4867 |
| chr10 | 5188416 | 3.88% | 5352 |
| chr11 | 5780140 | 4.28% | 5616 |
| chr12 | 5639901 | 4.23% | 5544 |
| chr13 | 2680479 | 2.34% | 2844 |
| chr14 | 3626939 | 3.39% | 3735 |
| chr15 | 4206910 | 4.12% | 4275 |
| chr16 | 3816645 | 4.22% | 3755 |
| chr17 | 5222638 | 6.27% | 5338 |
| chr18 | 2085728 | 2.60% | 2200 |
| chr19 | 3162604 | 5.40% | 3655 |
| chr20 | 2588700 | 4.02% | 2362 |
| chr21 | 1035553 | 2.22% | 1020 |
| chr22 | 1543329 | 3.04% | 1924 |
| chrX | 2225324 | 1.43% | 2802 |
| chrY | 139497 | 0.24% | 179 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 109782 | 170 | 23411 | 984.41 | 601 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF097EHD.bed.gz | 2.52 MB | c4568435229ba8df45747e6d74fb5a9b |
| ENCFF097EHD.tabix.bed.gz | 1.12 MB | 4d97776c37f9ad806ed8a0756439ccb9 |
| ENCFF097EHD.tabix.bed.gz.tbi | 142.0 KB | 32de29e9966d840dd015aba813239cb3 |
| genomic_resource.yaml | 2.16 KB | 29fb7afac655740c02f8883a2f6095a3 |
| statistics/ |
