Resource

Id Histone_ChIP-seq/ENCSR741FTWcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR741FTW [biosample_summary="Homo sapiens neurosphere female embryo (17 weeks) originated from ganglionic eminence" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR741FTW
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000427/
  • biosample_summary: Homo sapiens neurosphere female embryo (17 weeks) originated from ganglionic eminence
  • date_created: 2015-09-15T20:27:19.684514+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR741FTW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (17 weeks)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR741FTW float

Histone_ChIP-seq_ENCSR741FTW
Histone_ChIP-seq ENCSR741FTW [biosample_summary="Homo sapiens neurosphere female embryo (17 weeks) originated from ganglionic eminence" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR741FTW [1.33, 21.2]
n
35,554,058
mean
5.15
sd
1.52

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 355540581.11% 80328
chr1 2366547 0.95% 5418
chr2 2593868 1.07% 6160
chr3 1990228 1.00% 4773
chr4 1764691 0.93% 4204
chr5 2073982 1.14% 4746
chr6 1673007 0.98% 4161
chr7 2166807 1.36% 4982
chr8 2031849 1.40% 4314
chr9 1333894 0.96% 3017
chr10 1360306 1.02% 3207
chr11 1616110 1.20% 3751
chr12 1755373 1.32% 3752
chr13 1040040 0.91% 2461
chr14 1139653 1.06% 2666
chr15 1117240 1.10% 2522
chr16 1038725 1.15% 2278
chr17 859968 1.03% 1885
chr18 751630 0.94% 1793
chr19 3252278 5.55% 5417
chr20 693330 1.08% 1649
chr21 657171 1.41% 1376
chr22 563056 1.11% 1247
chrX 1714150 1.10% 4548
chrY 155 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 80328 140 14616 442.61 341
global segment-length histogram

Files

Filename Size md5
ENCFF656JEG.bed.gz 1.36 MB 7b5157b1c1cfff13bd52f37cfdd93e30
ENCFF656JEG.tabix.bed.gz 733.63 KB 1505d170e202555f3295cda4ec86d9ac
ENCFF656JEG.tabix.bed.gz.tbi 311.38 KB 6a348e1d48f0a063a72763961871da05
genomic_resource.yaml 1.61 KB 7052ca8488d0823e8fcbda6dfc79b428
statistics/