Histone_ChIP-seq_ENCSR738LBP
Histone_ChIP-seq ENCSR738LBP [biosample_summary="Homo sapiens thymus tissue male child (3 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR738LBP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR738LBP [biosamplesummary="Homo sapiens thymus tissue male child (3 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male child (3 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN941QMN|/analyses/ENCAN941QMN/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN941QMN|/analyses/ENCAN941QMN/} has in progress subobject document {2b587c99-9b87-400a-9219-c972b1a6b6a3|/documents/2b587c99-9b87-400a-9219-c972b1a6b6a3/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF950QAA|/files/ENCFF950QAA/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR738LBP | float |
Histone_ChIP-seq_ENCSR738LBP |
Histone_ChIP-seq ENCSR738LBP [biosample_summary="Homo sapiens thymus tissue male child (3 years)" and target="H3K4me3"]
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[2.02, 71] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF963LSO.bed.gz | 661.03 KB | 55bb58705120920c7abd74c30d426186 |
| ENCFF963LSO.bed.gz.dvc | 100.0 B | f2545f3a42b20aae63c34a90abce6f47 |
| ENCFF963LSO.tabix.bed.gz | 295.4 KB | 8023f428385305b3a635aade2ce1d395 |
| ENCFF963LSO.tabix.bed.gz.dvc | 106.0 B | cff64e9211da0c67ffa82cbc3b8fa437 |
| ENCFF963LSO.tabix.bed.gz.tbi | 151.82 KB | d8149912603ce1ba4f23fcee171dc006 |
| ENCFF963LSO.tabix.bed.gz.tbi.dvc | 110.0 B | 323dfe537174eccc202cf20b094b3614 |
| genomic_resource.yaml | 2.34 KB | f8533247bdaf85f2cd98b0bba793571f |
| genomic_resource_original.yaml | 2.21 KB | 74ee940e0d1217b1fd9ddd09939f06de |
| statistics/ |