Resource
| Id | Histone_ChIP-seq/ENCSR738BJJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR738BJJ [biosample_summary="Homo sapiens H9" and target="H2BK12ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN282TFE|/analyses/ENCAN282TFE/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF137KVB|/files/ENCFF137KVB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 15924459 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H2BK12ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR738BJJ | float |
Histone_ChIP-seq_ENCSR738BJJ |
Histone_ChIP-seq ENCSR738BJJ [biosample_summary="Homo sapiens H9" and target="H2BK12ac"]
|
![]() |
[1.83, 10.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 2749826 | 0.09% | 12372 |
| chr1 | 276890 | 0.11% | 1203 |
| chr1_KI270712v1_random | 157 | 0.09% | 1 |
| chr2 | 188335 | 0.08% | 863 |
| chr3 | 176501 | 0.09% | 814 |
| chr4 | 121608 | 0.06% | 587 |
| chr5 | 154076 | 0.08% | 702 |
| chr6 | 178349 | 0.10% | 798 |
| chr7 | 145275 | 0.09% | 664 |
| chr8 | 111611 | 0.08% | 521 |
| chr9 | 101250 | 0.07% | 455 |
| chr10 | 136910 | 0.10% | 618 |
| chr11 | 126233 | 0.09% | 571 |
| chr12 | 131177 | 0.10% | 591 |
| chr13 | 60637 | 0.05% | 294 |
| chr14 | 101027 | 0.09% | 452 |
| chr15 | 88157 | 0.09% | 386 |
| chr16 | 87820 | 0.10% | 403 |
| chr17 | 114555 | 0.14% | 506 |
| chr18 | 66947 | 0.08% | 304 |
| chr19 | 109655 | 0.19% | 467 |
| chr20 | 71799 | 0.11% | 317 |
| chr21 | 26608 | 0.06% | 123 |
| chr22 | 76282 | 0.15% | 298 |
| chr22_KI270733v1_random | 511 | 0.28% | 2 |
| chrX | 97456 | 0.06% | 432 |
| 3341 contigs with no values (185948685 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 12372 | 140 | 1604 | 222.26 | 189 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF351CAW.bed.gz | 247.61 KB | bef906bcdd753dee11fe7cd4ed59bc8f |
| ENCFF351CAW.tabix.bed.gz | 126.68 KB | 9b819e4b4d4bedef78795c21970bc5b3 |
| ENCFF351CAW.tabix.bed.gz.tbi | 85.21 KB | d14bf36ce623db9331ea6bd79a386b4a |
| genomic_resource.yaml | 1.85 KB | 71d02c4eb95d9588a29229d3e8aa781b |
| statistics/ |
