Resource
| Id | Histone_ChIP-seq/ENCSR736SFP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR736SFP [biosample_summary="Homo sapiens cingulate gyrus tissue male adult (81 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (81 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN914DQJ|/analyses/ENCAN914DQJ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF063IPV|/files/ENCFF063IPV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 26983349 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR736SFP | float |
Histone_ChIP-seq_ENCSR736SFP |
Histone_ChIP-seq ENCSR736SFP [biosample_summary="Homo sapiens cingulate gyrus tissue male adult (81 years)" and target="H3K36me3"]
|
 |
[1.72, 14.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 54779337 | 1.70% | 66910 |
| chr1 | 5646149 | 2.27% | 6849 |
| chr1_KI270711v1_random | 440 | 1.04% | 1 |
| chr2 | 3556687 | 1.47% | 4698 |
| chr3 | 3020796 | 1.52% | 3807 |
| chr4 | 1619316 | 0.85% | 2242 |
| chr5 | 2229964 | 1.23% | 2963 |
| chr6 | 2199176 | 1.29% | 2848 |
| chr7 | 2274480 | 1.43% | 2927 |
| chr8 | 1578349 | 1.09% | 2131 |
| chr9 | 2659755 | 1.92% | 3111 |
| chr10 | 2045299 | 1.53% | 2702 |
| chr11 | 3213478 | 2.38% | 3736 |
| chr12 | 3052996 | 2.29% | 3609 |
| chr13 | 873936 | 0.76% | 1240 |
| chr14 | 1772168 | 1.66% | 2311 |
| chr15 | 1967194 | 1.93% | 2527 |
| chr16 | 3059839 | 3.39% | 3385 |
| chr17 | 3758702 | 4.51% | 4231 |
| chr18 | 697287 | 0.87% | 1005 |
| chr19 | 4362226 | 7.44% | 4617 |
| chr20 | 2066397 | 3.21% | 2325 |
| chr21 | 657409 | 1.41% | 828 |
| chr22 | 1924570 | 3.79% | 2049 |
| chrX | 527294 | 0.34% | 748 |
| chrY | 15430 | 0.03% | 20 |
| 3341 contigs with no values (129034875 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 66910 | 215 | 10534 | 818.7 | 635 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF633HXH.bed.gz | 1.3 MB | 0617cc69d5a29ae2fa82bbe48822b3bf |
| ENCFF633HXH.tabix.bed.gz | 666.36 KB | b46f752d16548a9571c6cf8e9338e468 |
| ENCFF633HXH.tabix.bed.gz.tbi | 146.34 KB | 6bc53cbeebc1077c57422f3e1dbede61 |
| genomic_resource.yaml | 2.01 KB | 7c354eb46c01a493d3fc204a82722fed |
| statistics/ |