Resource
| Id | Histone_ChIP-seq/ENCSR734ZTQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR734ZTQ [biosample_summary="Homo sapiens sigmoid colon tissue male adult (37 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN050UEE|/analyses/ENCAN050UEE/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF567MTB|/files/ENCFF567MTB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF567MTB|/files/ENCFF567MTB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.14. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR734ZTQ | float |
Histone_ChIP-seq_ENCSR734ZTQ |
Histone_ChIP-seq ENCSR734ZTQ [biosample_summary="Homo sapiens sigmoid colon tissue male adult (37 years)" and target="H3K27me3"]
|
 |
[1.53, 14.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 52139756 | 1.62% | 32276 |
| chr1 | 5507667 | 2.21% | 3502 |
| chr1_KI270709v1_random | 2793 | 4.18% | 1 |
| chr1_KI270712v1_random | 8245 | 4.68% | 9 |
| chr1_KI270713v1_random | 3776 | 9.27% | 4 |
| chr1_KI270714v1_random | 789 | 1.89% | 2 |
| chr2 | 2926435 | 1.21% | 1709 |
| chr3 | 1699297 | 0.86% | 1062 |
| chr4 | 1661004 | 0.87% | 888 |
| chr5 | 2460963 | 1.36% | 1432 |
| chr6 | 2807115 | 1.64% | 1529 |
| chr7 | 2436915 | 1.53% | 1456 |
| chr8 | 2203145 | 1.52% | 1391 |
| chr9 | 2275115 | 1.64% | 1307 |
| chr9_KI270717v1_random | 448 | 1.12% | 1 |
| chr9_KI270719v1_random | 394 | 0.22% | 1 |
| chr10 | 2373822 | 1.77% | 1478 |
| chr11 | 2529075 | 1.87% | 1690 |
| chr12 | 2673909 | 2.01% | 1702 |
| chr13 | 1109877 | 0.97% | 688 |
| chr14 | 1544079 | 1.44% | 954 |
| chr14_GL000225v1_random | 6726 | 3.19% | 10 |
| chr14_KI270725v1_random | 1881 | 1.09% | 2 |
| chr15 | 1350456 | 1.32% | 860 |
| chr16 | 2364612 | 2.62% | 1475 |
| chr17 | 3389880 | 4.07% | 2080 |
| chr17_GL000205v2_random | 70288 | 37.87% | 14 |
| chr18 | 775699 | 0.97% | 498 |
| chr19 | 4007139 | 6.84% | 2385 |
| chr20 | 2724355 | 4.23% | 1763 |
| chr21 | 688211 | 1.47% | 496 |
| chr22 | 2028908 | 3.99% | 1531 |
| chr22_KI270732v1_random | 3107 | 7.48% | 2 |
| chr22_KI270733v1_random | 13085 | 7.28% | 18 |
| chr22_KI270735v1_random | 1401 | 3.27% | 1 |
| chr22_KI270738v1_random | 1199 | 1.21% | 1 |
| chrM | 13483 | 81.37% | 6 |
| chrUn_GL000195v1 | 1581 | 0.86% | 2 |
| chrUn_GL000214v1 | 394 | 0.29% | 1 |
| chrUn_GL000218v1 | 589 | 0.37% | 1 |
| chrUn_GL000219v1 | 21402 | 11.94% | 14 |
| chrUn_GL000220v1 | 2997 | 1.85% | 7 |
| chrUn_GL000224v1 | 12099 | 6.73% | 12 |
| chrUn_KI270337v1 | 502 | 44.78% | 1 |
| chrUn_KI270438v1 | 2303 | 2.05% | 5 |
| chrUn_KI270442v1 | 350 | 0.09% | 1 |
| chrUn_KI270466v1 | 1022 | 82.89% | 1 |
| chrUn_KI270467v1 | 1732 | 44.18% | 1 |
| chrUn_KI270744v1 | 6563 | 3.90% | 7 |
| chrUn_KI270749v1 | 2551 | 1.61% | 2 |
| chrX | 410956 | 0.26% | 265 |
| chrY | 9422 | 0.02% | 8 |
| 3315 contigs with no values (125744644 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 32276 | 230 | 118661 | 1615.43 | 884 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF084JGS.bed.gz | 672.66 KB | db35342e12381d874a635209a7dbc2e6 |
| ENCFF084JGS.tabix.bed.gz | 330.49 KB | f1df0d0833ae5cddec4dc34c00fd9a36 |
| ENCFF084JGS.tabix.bed.gz.tbi | 104.74 KB | 5fa3931f77fc3d0e917cf77faa7a4403 |
| genomic_resource.yaml | 2.76 KB | 06f29b0a0aa1aa3cb19a3d8f8a6bd1c1 |
| statistics/ |