Histone_ChIP-seq_ENCSR734ZTQ
Histone_ChIP-seq ENCSR734ZTQ [biosample_summary="Homo sapiens sigmoid colon tissue male adult (37 years)" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR734ZTQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR734ZTQ [biosamplesummary="Homo sapiens sigmoid colon tissue male adult (37 years)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN050UEE|/analyses/ENCAN050UEE/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF567MTB|/files/ENCFF567MTB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF567MTB|/files/ENCFF567MTB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.14. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR734ZTQ | float |
Histone_ChIP-seq_ENCSR734ZTQ |
Histone_ChIP-seq ENCSR734ZTQ [biosample_summary="Homo sapiens sigmoid colon tissue male adult (37 years)" and target="H3K27me3"]
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[1.53, 14.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF084JGS.bed.gz | 672.66 KB | db35342e12381d874a635209a7dbc2e6 |
| ENCFF084JGS.bed.gz.dvc | 100.0 B | a2c4207aa5606b6989cccb36282bb30a |
| ENCFF084JGS.tabix.bed.gz | 330.49 KB | f1df0d0833ae5cddec4dc34c00fd9a36 |
| ENCFF084JGS.tabix.bed.gz.dvc | 106.0 B | c57348c91e857dca2103f8ea992fa4b9 |
| ENCFF084JGS.tabix.bed.gz.tbi | 104.74 KB | 5fa3931f77fc3d0e917cf77faa7a4403 |
| ENCFF084JGS.tabix.bed.gz.tbi.dvc | 110.0 B | db06be31b77c56c35fae13083a2d5694 |
| genomic_resource.yaml | 2.76 KB | 06f29b0a0aa1aa3cb19a3d8f8a6bd1c1 |
| genomic_resource_original.yaml | 2.62 KB | 1f9c31f053a128ff8bf44e26dc25b63a |
| statistics/ |