Resource
| Id | Histone_ChIP-seq/ENCSR734QPK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR734QPK [biosample_summary="Homo sapiens UCSF-4" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN320ENK|/analyses/ENCAN320ENK/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF688HZK|/files/ENCFF688HZK/} processed by ChIP-seq ENCODE3 hg19 pipeline has 22185508 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed redacted alignments file {ENCFF420IKS|/files/ENCFF420IKS/} processed by ChIP-seq ENCODE3 hg19 pipeline has 24106195 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR734QPK | float |
Histone_ChIP-seq_ENCSR734QPK |
Histone_ChIP-seq ENCSR734QPK [biosample_summary="Homo sapiens UCSF-4" and target="H3K36me3"]
|
 |
[1.32, 27.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 123541030 | 3.84% | 137408 |
| chr1 | 12362075 | 4.97% | 13242 |
| chr2 | 8208541 | 3.39% | 10589 |
| chr3 | 6831486 | 3.45% | 8355 |
| chr4 | 4388113 | 2.31% | 6023 |
| chr5 | 5803310 | 3.20% | 7169 |
| chr6 | 5130678 | 3.00% | 6443 |
| chr7 | 6010250 | 3.77% | 7088 |
| chr8 | 3953086 | 2.72% | 5026 |
| chr9 | 5217223 | 3.77% | 5898 |
| chr10 | 4684769 | 3.50% | 5661 |
| chr11 | 6332461 | 4.69% | 6577 |
| chr12 | 7584891 | 5.69% | 7120 |
| chr13 | 2170130 | 1.90% | 3225 |
| chr14 | 3901445 | 3.64% | 4759 |
| chr15 | 4094532 | 4.01% | 4843 |
| chr16 | 6156770 | 6.82% | 5513 |
| chr17 | 7536775 | 9.05% | 7257 |
| chr18 | 1791433 | 2.23% | 2610 |
| chr19 | 9362555 | 15.97% | 7451 |
| chr20 | 3931232 | 6.10% | 3787 |
| chr21 | 1604913 | 3.44% | 1616 |
| chr22 | 3809009 | 7.50% | 3322 |
| chrX | 2673334 | 1.71% | 3831 |
| chrY | 2019 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 137408 | 175 | 41640 | 899.08 | 524 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF794QZN.bed.gz | 2.81 MB | d7bc6bce49946bdb6a49d4c3ed51fc9b |
| ENCFF794QZN.tabix.bed.gz | 1.35 MB | d134f2836032f5c6699c494229557cbe |
| ENCFF794QZN.tabix.bed.gz.tbi | 221.48 KB | ee1131a2654bfacd18474e0468e6f928 |
| genomic_resource.yaml | 2.39 KB | 71706de86e546470761b8450d7b5b123 |
| statistics/ |