Resource
| Id | Histone_ChIP-seq/ENCSR734NCK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR734NCK [biosample_summary="Homo sapiens H9" and target="H2BK15ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN001CXO|/analyses/ENCAN001CXO/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF317USQ|/files/ENCFF317USQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18956483 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H2BK15ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR734NCK | float |
Histone_ChIP-seq_ENCSR734NCK |
Histone_ChIP-seq ENCSR734NCK [biosample_summary="Homo sapiens H9" and target="H2BK15ac"]
|
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[1.49, 6.41] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 1003614 | 0.03% | 5414 |
| chr1 | 85891 | 0.03% | 469 |
| chr1_KI270712v1_random | 187 | 0.11% | 1 |
| chr2 | 74557 | 0.03% | 406 |
| chr3 | 61937 | 0.03% | 328 |
| chr4 | 41866 | 0.02% | 228 |
| chr4_GL000008v2_random | 450 | 0.21% | 2 |
| chr5 | 50502 | 0.03% | 276 |
| chr6 | 55871 | 0.03% | 310 |
| chr7 | 53144 | 0.03% | 286 |
| chr8 | 43782 | 0.03% | 238 |
| chr9 | 45227 | 0.03% | 244 |
| chr10 | 47145 | 0.04% | 260 |
| chr11 | 45512 | 0.03% | 240 |
| chr12 | 44619 | 0.03% | 237 |
| chr13 | 21376 | 0.02% | 121 |
| chr14 | 33267 | 0.03% | 175 |
| chr15 | 32012 | 0.03% | 175 |
| chr16 | 43190 | 0.05% | 233 |
| chr17 | 51027 | 0.06% | 277 |
| chr17_GL000205v2_random | 387 | 0.21% | 2 |
| chr17_KI270730v1_random | 146 | 0.13% | 1 |
| chr18 | 24410 | 0.03% | 136 |
| chr19 | 51702 | 0.09% | 259 |
| chr20 | 25179 | 0.04% | 136 |
| chr21 | 14214 | 0.03% | 77 |
| chr22 | 26521 | 0.05% | 135 |
| chr22_KI270733v1_random | 1022 | 0.57% | 4 |
| chrUn_GL000220v1 | 143 | 0.09% | 1 |
| chrX | 28173 | 0.02% | 156 |
| chrY | 155 | <0.01% | 1 |
| 3336 contigs with no values (128051617 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 5414 | 140 | 579 | 185.37 | 170 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF264SLU.bed.gz | 101.53 KB | 16612a59d993c554cd1aff49b2310110 |
| ENCFF264SLU.tabix.bed.gz | 56.1 KB | 64f316cb5c03ab68e0c9dc8dcada6cd1 |
| ENCFF264SLU.tabix.bed.gz.tbi | 54.9 KB | ed56ed09aa40c6f6451c052703a72d20 |
| genomic_resource.yaml | 1.85 KB | 7f3a5d6cbe2fb6e41c466d7c0861c636 |
| statistics/ |
