Resource
| Id | Histone_ChIP-seq/ENCSR733QOZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR733QOZ [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (21 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (21 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN681MAI|/analyses/ENCAN681MAI/} has in progress subobject document {87373090-0808-4a9d-b6dd-d06768785c7a|/documents/87373090-0808-4a9d-b6dd-d06768785c7a/} audit_internal_action: Released analysis {ENCAN681MAI|/analyses/ENCAN681MAI/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF168RGK|/files/ENCFF168RGK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 12225281 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR733QOZ | float |
Histone_ChIP-seq_ENCSR733QOZ |
Histone_ChIP-seq ENCSR733QOZ [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (21 years)" and target="H3K27me3"]
|
 |
[2.22, 19.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 35514951 | 1.10% | 72713 |
| chr1 | 3717755 | 1.49% | 7840 |
| chr2 | 2678515 | 1.11% | 5398 |
| chr3 | 1630647 | 0.82% | 3443 |
| chr4 | 1307881 | 0.69% | 2572 |
| chr5 | 2193970 | 1.21% | 4213 |
| chr6 | 2155835 | 1.26% | 3983 |
| chr7 | 1694788 | 1.06% | 3366 |
| chr8 | 1447891 | 1.00% | 3035 |
| chr9 | 1552647 | 1.12% | 3213 |
| chr10 | 1921115 | 1.44% | 4043 |
| chr11 | 1949611 | 1.44% | 4145 |
| chr12 | 1627898 | 1.22% | 3229 |
| chr13 | 840124 | 0.73% | 1682 |
| chr14 | 1144495 | 1.07% | 2389 |
| chr15 | 1406658 | 1.38% | 2932 |
| chr16 | 1124267 | 1.24% | 2452 |
| chr17 | 1890471 | 2.27% | 3611 |
| chr18 | 707797 | 0.88% | 1620 |
| chr19 | 1761363 | 3.00% | 3428 |
| chr20 | 1393109 | 2.16% | 2940 |
| chr21 | 342762 | 0.73% | 737 |
| chr22 | 755962 | 1.49% | 1684 |
| chrX | 262663 | 0.17% | 737 |
| chrY | 6727 | 0.01% | 21 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 72713 | 190 | 11954 | 488.43 | 359 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF407VKP.bed.gz | 1.19 MB | 2779e9f26f234442418ab6a2cf2e395a |
| ENCFF407VKP.tabix.bed.gz | 644.64 KB | 90d87cf5dac515215ab1299e4b7de8ad |
| ENCFF407VKP.tabix.bed.gz.tbi | 224.57 KB | bf4a1847fd69fde64a8bb2238350fd44 |
| genomic_resource.yaml | 2.25 KB | 625891443834daec57ca56e9616147d4 |
| statistics/ |