Resource
| Id | Histone_ChIP-seq/ENCSR731XOV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR731XOV [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (49 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (49 years) nuclear fraction output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN030OSD|/analyses/ENCAN030OSD/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF558ZYV|/files/ENCFF558ZYV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 43708363 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR731XOV | float |
Histone_ChIP-seq_ENCSR731XOV |
Histone_ChIP-seq ENCSR731XOV [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (49 years)" and target="H3K27me3"]
|
 |
[1.71, 31.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 45439676 | 1.41% | 83105 |
| chr1 | 4831284 | 1.94% | 8445 |
| chr1_KI270713v1_random | 3022 | 7.42% | 3 |
| chr2 | 2622555 | 1.08% | 4743 |
| chr3 | 1377064 | 0.69% | 2482 |
| chr4 | 1308809 | 0.69% | 2080 |
| chr5 | 1857875 | 1.02% | 3226 |
| chr6 | 1863170 | 1.09% | 3241 |
| chr7 | 1792365 | 1.12% | 3124 |
| chr8 | 1602421 | 1.10% | 2913 |
| chr9 | 1844797 | 1.33% | 3102 |
| chr10 | 2273477 | 1.70% | 4104 |
| chr11 | 2285709 | 1.69% | 4221 |
| chr12 | 2016696 | 1.51% | 3586 |
| chr13 | 869329 | 0.76% | 1517 |
| chr14 | 1276458 | 1.19% | 2336 |
| chr14_GL000225v1_random | 3010 | 1.43% | 6 |
| chr14_KI270722v1_random | 255 | 0.13% | 1 |
| chr15 | 1272498 | 1.25% | 2354 |
| chr16 | 1702402 | 1.88% | 3149 |
| chr17 | 2935959 | 3.53% | 4932 |
| chr17_GL000205v2_random | 28994 | 15.62% | 38 |
| chr18 | 590125 | 0.73% | 1136 |
| chr19 | 2178438 | 3.72% | 3712 |
| chr20 | 2343739 | 3.64% | 4184 |
| chr21 | 596893 | 1.28% | 1115 |
| chr22 | 1691785 | 3.33% | 3214 |
| chr22_KI270733v1_random | 1712 | 0.95% | 5 |
| chrUn_GL000219v1 | 6890 | 3.84% | 8 |
| chrUn_GL000224v1 | 623 | 0.35% | 1 |
| chrUn_KI270744v1 | 1299 | 0.77% | 3 |
| chrX | 4260023 | 2.73% | 10124 |
| 3335 contigs with no values (184965806 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 83105 | 210 | 14514 | 546.77 | 394 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF376RLZ.bed.gz | 1.41 MB | d5b6839aa5997ed19e55812c222a0e76 |
| ENCFF376RLZ.tabix.bed.gz | 779.49 KB | c80eb62de422161fb1a7f49d0fcaafb1 |
| ENCFF376RLZ.tabix.bed.gz.tbi | 199.53 KB | 1a72e7efa951acf6935fbb3ee93739aa |
| genomic_resource.yaml | 2.16 KB | 80fbfd3308724ccbd0c14330c5db8e42 |
| statistics/ |