Resource

Id Histone_ChIP-seq/ENCSR731QXNcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR731QXN [biosample_summary="Homo sapiens esophagus squamous epithelium tissue male adult (37 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR731QXN
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0006920/
  • biosample_summary: Homo sapiens esophagus squamous epithelium tissue male adult (37 years)
  • date_created: 2018-04-26T17:36:14.882073+00:00
  • date_released: 2019-09-13
  • doi: 10.17989/ENCSR731QXN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR731QXN float

Histone_ChIP-seq_ENCSR731QXN
Histone_ChIP-seq ENCSR731QXN [biosample_summary="Homo sapiens esophagus squamous epithelium tissue male adult (37 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR731QXN [1.35, 96.7]
n
52,395,937
mean
49.9
sd
27.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 523959371.63% 27837
chr1 5288207 2.12% 2750
chr1_KI270712v1_random 5281 3.00% 4
chr1_KI270713v1_random 951 2.33% 2
chr1_KI270714v1_random 731 1.75% 2
chr2 3568091 1.47% 1905
chr3 2886629 1.46% 1511
chr4 2093840 1.10% 1111
chr5 2396578 1.32% 1264
chr6 2937845 1.72% 1556
chr7 2508855 1.57% 1387
chr8 1907191 1.31% 1035
chr9 2204721 1.59% 1186
chr9_KI270717v1_random 1003 2.50% 1
chr10 2225436 1.66% 1223
chr11 2856670 2.11% 1448
chr12 2743543 2.06% 1383
chr13 1067388 0.93% 596
chr14 1708643 1.60% 872
chr14_GL000194v1_random 256 0.13% 1
chr15 1677314 1.64% 886
chr16 2065049 2.29% 1106
chr17 3193983 3.84% 1649
chr17_GL000205v2_random 2599 1.40% 2
chr18 871905 1.08% 485
chr19 3431960 5.85% 1909
chr20 1407782 2.18% 759
chr21 549183 1.18% 301
chr22 1226854 2.41% 655
chr22_KI270733v1_random 398 0.22% 1
chrUn_GL000195v1 2079 1.14% 3
chrUn_GL000219v1 5897 3.29% 4
chrUn_GL000220v1 783 0.48% 1
chrUn_KI270438v1 943 0.84% 2
chrUn_KI270467v1 644 16.43% 1
chrX 1500276 0.96% 808
chrY 56429 0.10% 28
3330 contigs with no values (127581365 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 27837 237 24156 1882.24 1596
global segment-length histogram

Files

Filename Size md5
ENCFF258FUI.bed.gz 779.21 KB ecd16e3ee141e99653a4697a87ecf86c
ENCFF258FUI.tabix.bed.gz 326.49 KB 7b564e9a2d3a63e8adf2b9af723165f7
ENCFF258FUI.tabix.bed.gz.tbi 173.71 KB 29b0ec561e5a8262864ceb08d92ffe22
genomic_resource.yaml 1.74 KB 43d1a1a35038b99b73fe7754ab5e7d2c
statistics/