Histone_ChIP-seq_ENCSR730FLZ
Histone_ChIP-seq ENCSR730FLZ [biosample_summary="Homo sapiens ES-I3" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR730FLZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR730FLZ [biosamplesummary="Homo sapiens ES-I3" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN689USM|/analyses/ENCAN689USM/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF034HOR|/files/ENCFF034HOR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 22483470 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF117URS|/files/ENCFF117URS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 13475854 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF034HOR|/files/ENCFF034HOR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF034HOR|/files/ENCFF034HOR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.82. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR730FLZ | float |
Histone_ChIP-seq_ENCSR730FLZ |
Histone_ChIP-seq ENCSR730FLZ [biosample_summary="Homo sapiens ES-I3" and target="H3K4me1"]
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[1.66, 13.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF327XLP.bed.gz | 3.38 MB | bce0d2db834e560834896d7b24549e68 |
| ENCFF327XLP.bed.gz.dvc | 101.0 B | 22828b3f01d099a4c93354826b1947c6 |
| ENCFF327XLP.tabix.bed.gz | 1.59 MB | c8d04c5398b02471634129ae48f004ca |
| ENCFF327XLP.tabix.bed.gz.dvc | 107.0 B | af0c7ba9c5b8d806f9d5833a2f3f770f |
| ENCFF327XLP.tabix.bed.gz.tbi | 467.37 KB | 59cd6ab2fd4d67a6db385144809b780a |
| ENCFF327XLP.tabix.bed.gz.tbi.dvc | 110.0 B | d707d447ad0b3306440e0a5efe92cdbc |
| genomic_resource.yaml | 3.67 KB | 5b5631dbceb821f0b7c692d639fc6c0a |
| genomic_resource_original.yaml | 3.56 KB | eb47cfd11eeae1b35f2df1f7da4e887f |
| statistics/ |