Resource

Id Histone_ChIP-seq/ENCSR729NVNcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR729NVN [biosample_summary="Homo sapiens H9" and target="H4K20me1"]
Description
Labels
  • accession: ENCSR729NVN
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0003045/
  • biosample_summary: Homo sapiens H9
  • date_created: 2015-09-16T19:16:52.024687+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR729NVN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H4K20me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR729NVN float

Histone_ChIP-seq_ENCSR729NVN
Histone_ChIP-seq ENCSR729NVN [biosample_summary="Homo sapiens H9" and target="H4K20me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR729NVN [1.91, 8.51]
n
6,311,428
mean
3.49
sd
0.685

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 63114280.20% 55093
chr1 550622 0.22% 4766
chr2 472420 0.20% 4177
chr3 354979 0.18% 3175
chr4 253072 0.13% 2275
chr5 326810 0.18% 2879
chr6 302588 0.18% 2723
chr7 319888 0.20% 2812
chr8 286465 0.20% 2539
chr9 278814 0.20% 2416
chr10 305121 0.23% 2665
chr11 330935 0.24% 2858
chr12 287497 0.22% 2505
chr13 157029 0.14% 1399
chr14 192111 0.18% 1691
chr14_GL000225v1_random 137 0.06% 1
chr14_KI270722v1_random 94 0.05% 1
chr15 198154 0.19% 1738
chr16 283004 0.31% 2417
chr17 305012 0.37% 2562
chr17_GL000205v2_random 90 0.05% 1
chr17_KI270729v1_random 90 0.03% 1
chr17_KI270730v1_random 93 0.08% 1
chr18 146911 0.18% 1303
chr19 273920 0.47% 2247
chr20 219436 0.34% 1885
chr21 81601 0.17% 702
chr22 179769 0.35% 1487
chr22_KI270736v1_random 90 0.05% 1
chr22_KI270737v1_random 90 0.09% 1
chrM 244 1.47% 1
chrUn_GL000195v1 155 0.08% 1
chrUn_GL000216v2 90 0.05% 1
chrUn_GL000218v1 90 0.06% 1
chrUn_KI270442v1 243 0.06% 2
chrUn_KI270753v1 90 0.14% 1
chrX 203674 0.13% 1858
3330 contigs with no values (184042313 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 55093 90 634 114.56 90
global segment-length histogram

Files

Filename Size md5
ENCFF067OSM.bed.gz 869.61 KB e9e851ebd51c35e78d2e20678cfb963b
ENCFF067OSM.tabix.bed.gz 488.62 KB 5d871ec467e4df1f3079b8d5c70e6be4
ENCFF067OSM.tabix.bed.gz.tbi 323.3 KB cf68697494bb2df323c28ebdc0901528
genomic_resource.yaml 1.86 KB a3a034d289b1c8decf762a612a272bc1
statistics/