Resource

Id Histone_ChIP-seq/ENCSR729GQTcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR729GQT [biosample_summary="Homo sapiens iPS-20b" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR729GQT
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007108/
  • biosample_summary: Homo sapiens iPS-20b
  • date_created: 2015-09-15T19:51:37.099885+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR729GQT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR729GQT float

Histone_ChIP-seq_ENCSR729GQT
Histone_ChIP-seq ENCSR729GQT [biosample_summary="Homo sapiens iPS-20b" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR729GQT [1.88, 18.4]
n
18,351,483
mean
5.53
sd
2.07

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 183514830.57% 24365
chr1 1799362 0.72% 2352
chr2 1371350 0.57% 1850
chr3 1186225 0.60% 1628
chr4 894316 0.47% 1211
chr5 1022973 0.56% 1318
chr6 1261320 0.74% 1625
chr7 950863 0.60% 1278
chr8 687721 0.47% 974
chr9 740424 0.54% 968
chr10 836716 0.63% 1102
chr11 931410 0.69% 1221
chr12 1071947 0.80% 1374
chr13 462672 0.40% 628
chr14 568852 0.53% 743
chr15 549910 0.54% 727
chr16 561794 0.62% 765
chr17 809623 0.97% 1090
chr17_GL000205v2_random 657 0.35% 1
chr18 364287 0.45% 482
chr19 724109 1.24% 997
chr20 459955 0.71% 598
chr21 175466 0.38% 231
chr22 338912 0.67% 439
chrX 542732 0.35% 714
chrY 37887 0.07% 49
3341 contigs with no values (128891494 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 24365 240 6422 753.19 630
global segment-length histogram

Files

Filename Size md5
ENCFF748FSW.bed.gz 550.63 KB 323c54bb5938a6bb785396adac3f76bb
ENCFF748FSW.tabix.bed.gz 260.19 KB bc0c2d497e938bb68939176f00787905
ENCFF748FSW.tabix.bed.gz.tbi 135.68 KB 73abd4215284b03e6f168ffdfe9ee9d7
genomic_resource.yaml 1.37 KB 37e68970071c7990a4347a7249e9fbd2
statistics/