Resource

Id Histone_ChIP-seq/ENCSR729ENOcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR729ENO [biosample_summary="Homo sapiens GM23338 originated from GM23248" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR729ENO
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007950/
  • biosample_summary: Homo sapiens GM23338 originated from GM23248
  • date_created: 2015-08-27T17:07:40.745550+00:00
  • date_released: 2016-05-03
  • doi: 10.17989/ENCSR729ENO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment: Files ENCFF114PLS, ENCFF479VFS had incorrectly identified paired_end 1 and 2 metadata respectively. They have been corrected to match its fastq file flowcell signature accordingly.
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR729ENO float

Histone_ChIP-seq_ENCSR729ENO
Histone_ChIP-seq ENCSR729ENO [biosample_summary="Homo sapiens GM23338 originated from GM23248" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR729ENO [1.46, 42.7]
n
70,584,895
mean
5.13
sd
3.27

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 705848952.19% 86403
chr1 6910009 2.78% 8327
chr2 4961987 2.05% 6246
chr3 4412652 2.23% 5454
chr4 3464232 1.82% 4167
chr5 3884044 2.14% 4594
chr6 4215429 2.47% 5009
chr7 3953589 2.48% 4895
chr8 2808382 1.93% 3420
chr9 2926183 2.11% 3681
chr10 3063006 2.29% 3783
chr11 3314378 2.45% 4078
chr12 4082608 3.06% 4927
chr13 1682629 1.47% 2152
chr14 2150876 2.01% 2700
chr15 2159491 2.12% 2766
chr16 2537369 2.81% 3225
chr17 3420955 4.11% 4228
chr18 1358956 1.69% 1644
chr19 3030509 5.17% 3677
chr20 1879891 2.92% 2156
chr21 724767 1.55% 946
chr22 1506690 2.96% 1882
chrX 1983599 1.27% 2287
chrY 152664 0.27% 159
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 86403 195 21296 816.93 607
global segment-length histogram

Files

Filename Size md5
ENCFF022FUU.bed.gz 2.11 MB b1dea9db9fe053fd0ea1360323c44423
ENCFF022FUU.tabix.bed.gz 928.2 KB 49608a8cca8d9e58ceb270d84c7bef69
ENCFF022FUU.tabix.bed.gz.tbi 271.71 KB 3a23d5d58acbeed660d04a49c94c0068
genomic_resource.yaml 2.35 KB 3c0341e8dc6131c362f42ff946341c88
statistics/