Histone_ChIP-seq_ENCSR729AAI
Histone_ChIP-seq ENCSR729AAI [biosample_summary="Homo sapiens heart left ventricle tissue male adult (73 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR729AAI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR729AAI [biosamplesummary="Homo sapiens heart left ventricle tissue male adult (73 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (73 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN569BMB|/analyses/ENCAN569BMB/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF627IMW|/files/ENCFF627IMW/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF627IMW|/files/ENCFF627IMW/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.56. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR729AAI | float |
Histone_ChIP-seq_ENCSR729AAI |
Histone_ChIP-seq ENCSR729AAI [biosample_summary="Homo sapiens heart left ventricle tissue male adult (73 years)" and target="H3K4me3"]
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[1.88, 84.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF020ZIL.bed.gz | 766.21 KB | 57c0d5d2782e62197dd4d0a1d1ea78a1 |
| ENCFF020ZIL.bed.gz.dvc | 100.0 B | 8a5c8f2b163b06e8b12f37368450d356 |
| ENCFF020ZIL.tabix.bed.gz | 328.6 KB | 88d22a03217a03418beb6779e968f23d |
| ENCFF020ZIL.tabix.bed.gz.dvc | 106.0 B | f637def379d4be54c312d9c901ee28fa |
| ENCFF020ZIL.tabix.bed.gz.tbi | 176.16 KB | f0cfcf93f5467b956dc482c6ae700616 |
| ENCFF020ZIL.tabix.bed.gz.tbi.dvc | 110.0 B | 67a60f8c07ac1f63dad4ebe17070dc07 |
| genomic_resource.yaml | 2.79 KB | d123e8b3802a33b63094821a080900cc |
| genomic_resource_original.yaml | 2.65 KB | 93100fce6ecb8a4eb5647c09c6e01b5c |
| statistics/ |