Resource

Id Histone_ChIP-seq/ENCSR728GTLcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR728GTL [biosample_summary="Homo sapiens fibroblast of breast female adult (17 years)" and target="H3K36me3"]
Description
Labels
  • accession: ENCSR728GTL
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0003079/
  • biosample_summary: Homo sapiens fibroblast of breast female adult (17 years)
  • date_created: 2015-09-15T20:26:33.720441+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR728GTL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (17 years)
  • status: released
  • submitter_comment:
  • target: H3K36me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR728GTL float

Histone_ChIP-seq_ENCSR728GTL
Histone_ChIP-seq ENCSR728GTL [biosample_summary="Homo sapiens fibroblast of breast female adult (17 years)" and target="H3K36me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR728GTL [1.68, 23]
n
56,516,734
mean
4.63
sd
1.46

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 565167341.76% 107513
chr1 5980230 2.40% 11100
chr1_KI270711v1_random 1624 3.85% 3
chr2 4619053 1.91% 9191
chr3 3595074 1.81% 7324
chr4 2241245 1.18% 4877
chr5 3156629 1.74% 6247
chr6 2570801 1.51% 5283
chr7 2532137 1.59% 5059
chr8 1870636 1.29% 3919
chr9 2605786 1.88% 4819
chr10 2452600 1.83% 4822
chr11 2955950 2.19% 5405
chr12 3378665 2.54% 6082
chr13 1073116 0.94% 2397
chr14 1930027 1.80% 3766
chr15 2113208 2.07% 4247
chr16 2301536 2.55% 3949
chr17 2994505 3.60% 5255
chr18 884037 1.10% 1884
chr19 3759878 6.41% 5306
chr20 1359878 2.11% 2519
chr21 558244 1.20% 1035
chr22 1180723 2.32% 2003
chrUn_GL000218v1 302 0.19% 2
chrUn_GL000219v1 1456 0.81% 5
chrUn_KI270438v1 231 0.21% 1
chrX 399163 0.26% 1013
3339 contigs with no values (185809440 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 107513 150 12657 525.67 382
global segment-length histogram

Files

Filename Size md5
ENCFF649BLN.bed.gz 2.01 MB 40d45c0693fee95ecd1a2ebc499dde41
ENCFF649BLN.tabix.bed.gz 1021.02 KB 294eab34fa86aa69908792f731a1c479
ENCFF649BLN.tabix.bed.gz.tbi 169.32 KB 974b2ee13e3f7a8799c952313fe06530
genomic_resource.yaml 2.01 KB 78d19904e2407c55464ed1408fbd16e9
statistics/