Histone_ChIP-seq_ENCSR728FLA
Histone_ChIP-seq ENCSR728FLA [biosample_summary="Homo sapiens lung tissue female adult (30 years)" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR728FLA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR728FLA [biosamplesummary="Homo sapiens lung tissue female adult (30 years)" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (30 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN854GZO|/analyses/ENCAN854GZO/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF611DHC|/files/ENCFF611DHC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF611DHC|/files/ENCFF611DHC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.25. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR728FLA | float |
Histone_ChIP-seq_ENCSR728FLA |
Histone_ChIP-seq ENCSR728FLA [biosample_summary="Homo sapiens lung tissue female adult (30 years)" and target="H3K9me3"]
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[1.35, 33.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF533QEX.bed.gz | 2.52 MB | 3b4ad03d002018dab159fe266e5b5a22 |
| ENCFF533QEX.bed.gz.dvc | 101.0 B | b9b7ca5646c02e606891b8e2fa720aa6 |
| ENCFF533QEX.tabix.bed.gz | 1.33 MB | 769b3e9f2bd8706c059ccff68c3de400 |
| ENCFF533QEX.tabix.bed.gz.dvc | 107.0 B | 58a0e882407b85d9777337b9962b49b3 |
| ENCFF533QEX.tabix.bed.gz.tbi | 509.25 KB | e427a5c00e9a51ef7acf4902acf5279f |
| ENCFF533QEX.tabix.bed.gz.tbi.dvc | 110.0 B | bdb223b9a05072adcf9c84cc7434ba28 |
| genomic_resource.yaml | 2.74 KB | d2b9943194fdce78347742cf1f7f259a |
| genomic_resource_original.yaml | 2.6 KB | 720f36a404099948a0fb22d57d7a80e9 |
| statistics/ |