Resource
| Id | Histone_ChIP-seq/ENCSR727VOB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR727VOB [biosample_summary="Homo sapiens lung tissue female embryo (82 days)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (82 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN953XXG|/analyses/ENCAN953XXG/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN953XXG|/analyses/ENCAN953XXG/} has in progress subobject document {ae5c4c83-ec98-4590-bb46-94c0d0de8aa4|/documents/ae5c4c83-ec98-4590-bb46-94c0d0de8aa4/} audit_not_compliant: Processed alignments file {ENCFF141DHN|/files/ENCFF141DHN/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 10437095 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR727VOB | float |
Histone_ChIP-seq_ENCSR727VOB |
Histone_ChIP-seq ENCSR727VOB [biosample_summary="Homo sapiens lung tissue female embryo (82 days)" and target="H3K27me3"]
|
 |
[2.15, 47.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 48973534 | 1.52% | 78976 |
| chr1 | 3767836 | 1.51% | 5961 |
| chr2 | 2571501 | 1.06% | 3707 |
| chr3 | 1730090 | 0.87% | 2736 |
| chr4 | 1710953 | 0.90% | 2383 |
| chr5 | 2292958 | 1.26% | 3272 |
| chr6 | 2392511 | 1.40% | 3118 |
| chr7 | 2035672 | 1.28% | 2933 |
| chr8 | 1702253 | 1.17% | 2640 |
| chr9 | 1657976 | 1.20% | 2498 |
| chr10 | 2394240 | 1.79% | 3630 |
| chr11 | 1933617 | 1.43% | 3112 |
| chr12 | 2051070 | 1.54% | 3084 |
| chr13 | 919770 | 0.80% | 1272 |
| chr14 | 1226502 | 1.15% | 1777 |
| chr15 | 1123352 | 1.10% | 1692 |
| chr16 | 1219506 | 1.35% | 1987 |
| chr17 | 2134921 | 2.56% | 3381 |
| chr18 | 704845 | 0.88% | 1093 |
| chr19 | 1434572 | 2.45% | 2238 |
| chr20 | 1671679 | 2.59% | 2719 |
| chr21 | 407162 | 0.87% | 523 |
| chr22 | 785294 | 1.55% | 1370 |
| chrX | 11105254 | 7.12% | 21850 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 78976 | 180 | 26861 | 620.11 | 428 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF330RQK.bed.gz | 1.4 MB | 2161d31f7d61cdc09108997e039c3ce6 |
| ENCFF330RQK.tabix.bed.gz | 736.41 KB | cc83b44baba7710ae266e2ce5f0c90f8 |
| ENCFF330RQK.tabix.bed.gz.tbi | 173.67 KB | 954336b9b7cf7dd8b8c5c3727092f6d0 |
| genomic_resource.yaml | 2.19 KB | 7a21c0dde71f12171c11b44a24516faa |
| statistics/ |