Histone_ChIP-seq_ENCSR727TQS
Histone_ChIP-seq ENCSR727TQS [biosample_summary="Homo sapiens neurosphere female embryo (17 weeks) originated from cortex" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR727TQS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR727TQS [biosamplesummary="Homo sapiens neurosphere female embryo (17 weeks) originated from cortex" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (17 weeks) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN508NTH|/analyses/ENCAN508NTH/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF043ADT|/files/ENCFF043ADT/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF043ADT|/files/ENCFF043ADT/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.39. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR727TQS | float |
Histone_ChIP-seq_ENCSR727TQS |
Histone_ChIP-seq ENCSR727TQS [biosample_summary="Homo sapiens neurosphere female embryo (17 weeks) originated from cortex" and target="H3K4me1"]
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[1.65, 31.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF829FBN.bed.gz | 4.78 MB | e31e8e78b41e7df5662feb27b432d602 |
| ENCFF829FBN.bed.gz.dvc | 101.0 B | d06cee24be418873332ea1dee1fd6320 |
| ENCFF829FBN.tabix.bed.gz | 2.17 MB | e5bbb7610249c02e713fa8b5abe00bba |
| ENCFF829FBN.tabix.bed.gz.dvc | 107.0 B | c273e31aec28ec8a19bf25053b5ba118 |
| ENCFF829FBN.tabix.bed.gz.tbi | 450.03 KB | 14ca964481a49ed7c9c33d6ad129e694 |
| ENCFF829FBN.tabix.bed.gz.tbi.dvc | 110.0 B | 7164a0d66b37974879ce6fd1e00ce9b5 |
| genomic_resource.yaml | 2.85 KB | 7ab46bcf1f5f323b76c763d072fdc6da |
| genomic_resource_original.yaml | 2.7 KB | 257b2a33cca9d6f0eac5dcb21ae66ada |
| statistics/ |