Histone_ChIP-seq_ENCSR726HTS
Histone_ChIP-seq ENCSR726HTS [biosample_summary="Homo sapiens spleen tissue female adult (53 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR726HTS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR726HTS [biosamplesummary="Homo sapiens spleen tissue female adult (53 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (53 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN971HBR|/analyses/ENCAN971HBR/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN971HBR|/analyses/ENCAN971HBR/} has in progress subobject document {feec31e3-d248-4aa8-9866-3fb5298ef9e7|/documents/feec31e3-d248-4aa8-9866-3fb5298ef9e7/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF123UXQ|/files/ENCFF123UXQ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF123UXQ|/files/ENCFF123UXQ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.41. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR726HTS | float |
Histone_ChIP-seq_ENCSR726HTS |
Histone_ChIP-seq ENCSR726HTS [biosample_summary="Homo sapiens spleen tissue female adult (53 years)" and target="H3K27ac"]
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[1.65, 90.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF559GDW.bed.gz | 2.31 MB | a9402ad92459f2fca999c6ddca0cbf7b |
| ENCFF559GDW.bed.gz.dvc | 101.0 B | 4c86155d1e3ba0c6b0fe178a3d895fca |
| ENCFF559GDW.tabix.bed.gz | 1023.0 KB | b5c73e771a77138eea068cc07c5d22a0 |
| ENCFF559GDW.tabix.bed.gz.dvc | 107.0 B | 583f7f43f4034a4471eb3b5db9d2eeb1 |
| ENCFF559GDW.tabix.bed.gz.tbi | 250.37 KB | aeb32e330efaad47c3dfa50eb26c5405 |
| ENCFF559GDW.tabix.bed.gz.tbi.dvc | 110.0 B | 863b866d71761986861cfd9c07fc794e |
| genomic_resource.yaml | 2.98 KB | 185a4c75d112b72524a8f1ede910e3eb |
| genomic_resource_original.yaml | 2.84 KB | 897ca69925ba7a5c489cfeb1c1826ce5 |
| statistics/ |