Histone_ChIP-seq_ENCSR724MJX
Histone_ChIP-seq ENCSR724MJX [biosample_summary="Homo sapiens heart left ventricle tissue male adult (43 years)" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR724MJX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR724MJX [biosamplesummary="Homo sapiens heart left ventricle tissue male adult (43 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (43 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN754PEE|/analyses/ENCAN754PEE/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF451FGF|/files/ENCFF451FGF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF451FGF|/files/ENCFF451FGF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.38. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR724MJX | float |
Histone_ChIP-seq_ENCSR724MJX |
Histone_ChIP-seq ENCSR724MJX [biosample_summary="Homo sapiens heart left ventricle tissue male adult (43 years)" and target="H3K4me1"]
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[1.59, 14.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF348PDL.bed.gz | 3.31 MB | e5c2df773c28c76119a5849491b259f2 |
| ENCFF348PDL.bed.gz.dvc | 101.0 B | 68ed884b565847d9c1bdfdd156e71784 |
| ENCFF348PDL.tabix.bed.gz | 1.52 MB | 3d972fda19906d03e28d283eac3d934e |
| ENCFF348PDL.tabix.bed.gz.dvc | 107.0 B | 1526a50bbc4249d29df704de963478b8 |
| ENCFF348PDL.tabix.bed.gz.tbi | 325.25 KB | 3b4298c1b6de88902c8c1181615d1fac |
| ENCFF348PDL.tabix.bed.gz.tbi.dvc | 110.0 B | 7698e7a5deee0c63e2afe82bb95e5153 |
| genomic_resource.yaml | 2.79 KB | 2d13d401444fc18059fc10010cc2dfd6 |
| genomic_resource_original.yaml | 2.65 KB | fc5d0e203990780ae060a966b035d508 |
| statistics/ |