Resource

Id Histone_ChIP-seq/ENCSR716YITcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR716YIT [biosample_summary="Homo sapiens kidney tissue male adult (67 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR716YIT
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002113/
  • biosample_summary: Homo sapiens kidney tissue male adult (67 years)
  • date_created: 2015-09-15T19:52:20.333115+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR716YIT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (67 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR716YIT float

Histone_ChIP-seq_ENCSR716YIT
Histone_ChIP-seq ENCSR716YIT [biosample_summary="Homo sapiens kidney tissue male adult (67 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR716YIT [1.92, 55.2]
n
34,857,543
mean
13.8
sd
8.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 348575431.08% 49273
chr1 3420471 1.37% 4682
chr2 2505349 1.03% 3476
chr3 2133068 1.08% 2860
chr4 1652748 0.87% 2279
chr5 1775511 0.98% 2438
chr6 2177472 1.27% 2972
chr7 1679702 1.05% 2404
chr8 1297100 0.89% 1892
chr9 1449714 1.05% 2120
chr10 1550812 1.16% 2182
chr11 1825440 1.35% 2471
chr12 1915794 1.44% 2600
chr13 807170 0.71% 1176
chr14 1124077 1.05% 1504
chr15 1102892 1.08% 1548
chr16 1213127 1.34% 1818
chr17 1762423 2.12% 2563
chr18 608762 0.76% 920
chr19 1999074 3.41% 3146
chr20 801557 1.24% 1154
chr21 354791 0.76% 543
chr22 643175 1.27% 984
chrX 1012522 0.65% 1488
chrY 44792 0.08% 53
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 49273 150 8779 707.44 469
global segment-length histogram

Files

Filename Size md5
ENCFF913FVX.bed.gz 1.1 MB 12edff27a39ee619fe2c4d6e42d5e5d3
ENCFF913FVX.tabix.bed.gz 518.73 KB 2bd2929f19311af7c11026d875231164
ENCFF913FVX.tabix.bed.gz.tbi 198.53 KB fb082d87bac58e87dd13860ca74e95a3
genomic_resource.yaml 1.48 KB 43576239997e68e7a24123bae632fca1
statistics/