Resource
| Id | Histone_ChIP-seq/ENCSR716VIQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR716VIQ [biosample_summary="Homo sapiens T-cell male adult (21 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (21 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN859XQF|/analyses/ENCAN859XQF/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN859XQF|/analyses/ENCAN859XQF/} has in progress subobject document {effc6dca-41a7-4add-8c0c-1e4e2d107e93|/documents/effc6dca-41a7-4add-8c0c-1e4e2d107e93/} audit_not_compliant: Processed alignments file {ENCFF783YIM|/files/ENCFF783YIM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 22349392 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR716VIQ | float |
Histone_ChIP-seq_ENCSR716VIQ |
Histone_ChIP-seq ENCSR716VIQ [biosample_summary="Homo sapiens T-cell male adult (21 years)" and target="H3K36me3"]
|
 |
[1.88, 19.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 124783070 | 3.88% | 159553 |
| chr1 | 12357688 | 4.96% | 15298 |
| chr2 | 10117478 | 4.18% | 13231 |
| chr3 | 8035390 | 4.05% | 10528 |
| chr4 | 4538149 | 2.39% | 6657 |
| chr5 | 6511144 | 3.59% | 8430 |
| chr6 | 5999694 | 3.51% | 7906 |
| chr7 | 5431912 | 3.41% | 7410 |
| chr8 | 4086974 | 2.82% | 5773 |
| chr9 | 5178077 | 3.74% | 6140 |
| chr10 | 5310653 | 3.97% | 7024 |
| chr11 | 6434804 | 4.76% | 7503 |
| chr12 | 6892987 | 5.17% | 8547 |
| chr13 | 2691788 | 2.35% | 3839 |
| chr14 | 4642751 | 4.34% | 5889 |
| chr15 | 4349277 | 4.26% | 5846 |
| chr16 | 5587288 | 6.18% | 6647 |
| chr17 | 7432815 | 8.93% | 8780 |
| chr18 | 2072830 | 2.58% | 3007 |
| chr19 | 6056921 | 10.33% | 6953 |
| chr20 | 3907964 | 6.06% | 4515 |
| chr21 | 1574829 | 3.37% | 1936 |
| chr22 | 3311180 | 6.52% | 3743 |
| chrX | 2105406 | 1.35% | 3645 |
| chrY | 155071 | 0.27% | 306 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 159553 | 160 | 19664 | 782.08 | 515 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF523CYI.bed.gz | 3.14 MB | 7fa12b7bb8d9a594f0d423f11eccfc2b |
| ENCFF523CYI.tabix.bed.gz | 1.52 MB | bc62468e843b822fc8d3d8d959966d17 |
| ENCFF523CYI.tabix.bed.gz.tbi | 161.59 KB | 7259ec0d704d36ddad63f6e574c16cba |
| genomic_resource.yaml | 2.17 KB | bef2108e5ae84b3c3ae9319f74b72c8b |
| statistics/ |