Resource
| Id | Histone_ChIP-seq/ENCSR716CWA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR716CWA [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN989ENI|/analyses/ENCAN989ENI/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF416GLM|/files/ENCFF416GLM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 21855298 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed redacted alignments file {ENCFF783JQO|/files/ENCFF783JQO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 26347729 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR716CWA | float |
Histone_ChIP-seq_ENCSR716CWA |
Histone_ChIP-seq ENCSR716CWA [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell" and target="H3K36me3"]
|
 |
[1.64, 18.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 120508524 | 3.75% | 118929 |
| chr1 | 11740077 | 4.72% | 11495 |
| chr1_KI270711v1_random | 589 | 1.40% | 1 |
| chr2 | 9304899 | 3.84% | 9732 |
| chr3 | 7352328 | 3.71% | 7705 |
| chr4 | 4157758 | 2.19% | 4769 |
| chr5 | 5993253 | 3.30% | 6309 |
| chr6 | 5397936 | 3.16% | 5802 |
| chr7 | 5267757 | 3.31% | 5416 |
| chr8 | 4006644 | 2.76% | 4302 |
| chr9 | 5239165 | 3.79% | 4829 |
| chr10 | 4995720 | 3.73% | 5137 |
| chr11 | 6303371 | 4.67% | 5733 |
| chr12 | 6694888 | 5.02% | 6451 |
| chr13 | 2389505 | 2.09% | 2712 |
| chr14 | 4210202 | 3.93% | 4357 |
| chr15 | 4134281 | 4.05% | 4293 |
| chr16 | 5807256 | 6.43% | 5020 |
| chr17 | 7229889 | 8.68% | 6433 |
| chr17_GL000205v2_random | 539 | 0.29% | 1 |
| chr18 | 1891940 | 2.35% | 2139 |
| chr19 | 7373920 | 12.58% | 6086 |
| chr20 | 3945491 | 6.12% | 3532 |
| chr21 | 1630230 | 3.49% | 1463 |
| chr22 | 3488855 | 6.87% | 2863 |
| chrX | 1945531 | 1.25% | 2334 |
| chrY | 6500 | 0.01% | 15 |
| 3340 contigs with no values (128849284 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 118929 | 210 | 38661 | 1013.28 | 681 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF859TBL.bed.gz | 2.67 MB | 466aa350077827c2cf76ce181bc817b5 |
| ENCFF859TBL.tabix.bed.gz | 1.21 MB | 322c724b2342e885104d42aea4b4740c |
| ENCFF859TBL.tabix.bed.gz.tbi | 158.46 KB | 739086cf09bc22c132c13627a3586ec5 |
| genomic_resource.yaml | 2.61 KB | aa02a85f2807689d9f355108eb322006 |
| statistics/ |