Histone_ChIP-seq_ENCSR714SGY
Histone_ChIP-seq ENCSR714SGY [biosample_summary="Homo sapiens muscle of trunk tissue female embryo (115 days)" and target="H3K4me3"]
×
| Id: | Histone_ChIP-seq/ENCSR714SGY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR714SGY [biosamplesummary="Homo sapiens muscle of trunk tissue female embryo (115 days)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (115 days) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN921MVU|/analyses/ENCAN921MVU/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF240PMO|/files/ENCFF240PMO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR714SGY | float |
Histone_ChIP-seq_ENCSR714SGY |
Histone_ChIP-seq ENCSR714SGY [biosample_summary="Homo sapiens muscle of trunk tissue female embryo (115 days)" and target="H3K4me3"]
|
|
[1.67, 93.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF409AMD.bed.gz | 822.51 KB | 45ad589c466428e0040e2a8ee67e7fb5 |
| ENCFF409AMD.bed.gz.dvc | 100.0 B | 273fe98bd4eab73193c03264e6d7a735 |
| ENCFF409AMD.tabix.bed.gz | 346.25 KB | 092cba0fcc6ac880b820bdb143ad5139 |
| ENCFF409AMD.tabix.bed.gz.dvc | 106.0 B | b5699371936a0830cc867278ec806bf4 |
| ENCFF409AMD.tabix.bed.gz.tbi | 157.5 KB | ae3b548047503df0aea20dd659528a58 |
| ENCFF409AMD.tabix.bed.gz.tbi.dvc | 110.0 B | aed90531a08a5a38026be68171d3ea10 |
| genomic_resource.yaml | 2.16 KB | 1b2634d575451cbd7b06c98c1dcaab0d |
| genomic_resource_original.yaml | 2.02 KB | dafe9580471422a09a4e82e738d975ae |
| statistics/ |