Resource

Id Histone_ChIP-seq/ENCSR714QUEcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR714QUE [biosample_summary="Homo sapiens BLaER1 9 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me2"]
Description
Labels
  • accession: ENCSR714QUE
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0030018/
  • biosample_summary: Homo sapiens BLaER1 9 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • date_created: 2022-01-27T21:50:19.886292+00:00
  • date_released: 2022-05-10
  • doi: 10.17989/ENCSR714QUE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: 9 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • status: released
  • submitter_comment:
  • target: H3K4me2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR714QUE float

Histone_ChIP-seq_ENCSR714QUE
Histone_ChIP-seq ENCSR714QUE [biosample_summary="Homo sapiens BLaER1 9 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me2"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR714QUE [1.36, 31]
n
236,440,663
mean
9.86
sd
5.39

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2364406637.35% 172376
chr1 22243616 8.93% 15973
chr1_KI270706v1_random 536 0.31% 2
chr1_KI270710v1_random 271 0.67% 1
chr1_KI270712v1_random 2195 1.25% 3
chr1_KI270713v1_random 9858 24.19% 11
chr1_KI270714v1_random 1573 3.77% 3
chr2 18380801 7.59% 13882
chr3 12754999 6.43% 10105
chr3_GL000221v1_random 4541 2.92% 7
chr4 8621213 4.53% 7009
chr4_GL000008v2_random 670 0.32% 2
chr5 11451720 6.31% 8738
chr6 11836532 6.93% 9086
chr7 11645505 7.31% 8977
chr8 10761579 7.41% 8026
chr9 10450038 7.55% 7425
chr9_KI270719v1_random 328 0.19% 1
chr10 12241860 9.15% 9007
chr11 11662595 8.63% 8096
chr11_KI270721v1_random 2662 2.65% 6
chr12 10611573 7.96% 7662
chr13 5268656 4.61% 4411
chr14 7857772 7.34% 5472
chr14_GL000009v2_random 2978 1.48% 6
chr14_GL000194v1_random 2483 1.30% 5
chr14_GL000225v1_random 1089 0.52% 1
chr14_KI270723v1_random 1055 2.77% 2
chr14_KI270724v1_random 269 0.68% 1
chr14_KI270726v1_random 3978 9.09% 5
chr15 7878233 7.72% 5744
chr15_KI270727v1_random 3081 0.69% 4
chr16 10389513 11.50% 6894
chr16_KI270728v1_random 3708 0.20% 7
chr17 13463955 16.17% 8408
chr17_GL000205v2_random 16920 9.12% 12
chr17_KI270729v1_random 726 0.26% 2
chr18 4741043 5.90% 3768
chr19 10126723 17.28% 6495
chr20 8119501 12.60% 5687
chr21 3548612 7.60% 2463
chr22 7243452 14.25% 4436
chr22_KI270731v1_random 2772 1.84% 5
chr22_KI270733v1_random 5468 3.04% 10
chr22_KI270734v1_random 1590 0.96% 3
chrUn_GL000195v1 4321 2.36% 6
chrUn_GL000214v1 1932 1.40% 3
chrUn_GL000216v2 1737 0.98% 2
chrUn_GL000218v1 259 0.16% 1
chrUn_GL000219v1 10379 5.79% 12
chrUn_GL000220v1 1817 1.12% 5
chrUn_GL000224v1 879 0.49% 1
chrUn_KI270438v1 294 0.26% 1
chrUn_KI270442v1 1552 0.40% 2
chrUn_KI270519v1 1116 0.81% 3
chrUn_KI270742v1 378 0.20% 1
chrUn_KI270744v1 6807 4.04% 8
chrUn_KI270751v1 2067 1.37% 3
chrUn_KI270753v1 2976 4.73% 2
chrUn_KI270755v1 399 1.09% 1
chrX 5029382 3.22% 4450
chrY 6126 0.01% 12
3305 contigs with no values (121524935 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 172376 250 59561 1371.66 796
global segment-length histogram

Files

Filename Size md5
ENCFF162YQH.bed.gz 3.89 MB 1faa82a0771d32455d6c8d9f7ebb1d27
ENCFF162YQH.tabix.bed.gz 1.77 MB 1ad8723cbfbc00a3cfb575be4e6b34ab
ENCFF162YQH.tabix.bed.gz.tbi 391.69 KB 5c595b973b6ee21387c787a88bf9c651
genomic_resource.yaml 3.11 KB a66a3f1e9f3a0c9e67aabcee06b9263b
statistics/