Resource

Id Histone_ChIP-seq/ENCSR714BDGcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR714BDG [biosample_summary="Homo sapiens colonic mucosa tissue female adult (56 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR714BDG
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000317/
  • biosample_summary: Homo sapiens colonic mucosa tissue female adult (56 years)
  • date_created: 2015-09-15T19:51:45.059960+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR714BDG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (56 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR714BDG float

Histone_ChIP-seq_ENCSR714BDG
Histone_ChIP-seq ENCSR714BDG [biosample_summary="Homo sapiens colonic mucosa tissue female adult (56 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR714BDG [1.92, 14]
n
36,124,800
mean
5.15
sd
1.56

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 361248001.12% 64078
chr1 3978599 1.60% 6845
chr1_KI270713v1_random 380 0.93% 1
chr2 2694286 1.11% 4847
chr3 2126536 1.07% 3917
chr4 1222167 0.64% 2378
chr5 1738377 0.96% 3130
chr6 1888368 1.11% 3529
chr7 1450520 0.91% 2734
chr8 1323483 0.91% 2456
chr9 1727176 1.25% 3026
chr10 1750290 1.31% 3124
chr11 2211132 1.64% 3692
chr12 1720006 1.29% 3079
chr13 642340 0.56% 1218
chr14 1382001 1.29% 2342
chr15 1415674 1.39% 2467
chr16 1516223 1.68% 2630
chr17 2365866 2.84% 3850
chr17_GL000205v2_random 938 0.51% 2
chr18 621650 0.77% 1171
chr19 1533912 2.62% 2689
chr20 1141039 1.77% 1986
chr21 412913 0.88% 758
chr22 1024904 2.02% 1674
chrX 236020 0.15% 533
3341 contigs with no values (186078164 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 64078 220 6923 563.76 460
global segment-length histogram

Files

Filename Size md5
ENCFF391XKN.bed.gz 1.15 MB 660f77227e74402da382c4884f3541d7
ENCFF391XKN.tabix.bed.gz 617.16 KB b6d89011bacd599bd2a50d6bb66ca185
ENCFF391XKN.tabix.bed.gz.tbi 224.35 KB e10cd54e52f946e0716b9bc48b4392dd
genomic_resource.yaml 2.01 KB e1a9d407b86ad0abda7af82767fe0827
statistics/