Resource
| Id | Histone_ChIP-seq/ENCSR713QLX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR713QLX [biosample_summary="Homo sapiens IMR-90" and target="H3K79me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN942NQI|/analyses/ENCAN942NQI/} has in progress subobject document {590d1bcc-81f4-4267-8ff0-ccb338f439a2|/documents/590d1bcc-81f4-4267-8ff0-ccb338f439a2/} audit_internal_action: Released analysis {ENCAN942NQI|/analyses/ENCAN942NQI/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF302COI|/files/ENCFF302COI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 11911969 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF571ZDL|/files/ENCFF571ZDL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 22952900 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR713QLX | float |
Histone_ChIP-seq_ENCSR713QLX |
Histone_ChIP-seq ENCSR713QLX [biosample_summary="Homo sapiens IMR-90" and target="H3K79me2"]
|
 |
[1.6, 53.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 113172202 | 3.52% | 141318 |
| chr1 | 10141496 | 4.07% | 12512 |
| chr2 | 9167328 | 3.79% | 11636 |
| chr3 | 7304899 | 3.68% | 9934 |
| chr4 | 4326008 | 2.27% | 6175 |
| chr5 | 5971624 | 3.29% | 7618 |
| chr6 | 5223572 | 3.06% | 7555 |
| chr7 | 5947866 | 3.73% | 7733 |
| chr8 | 4474879 | 3.08% | 5785 |
| chr9 | 5100238 | 3.69% | 6170 |
| chr10 | 5723725 | 4.28% | 7294 |
| chr11 | 5744778 | 4.25% | 6884 |
| chr12 | 5634707 | 4.23% | 7171 |
| chr13 | 2988754 | 2.61% | 4075 |
| chr14 | 3755268 | 3.51% | 4862 |
| chr15 | 4237345 | 4.15% | 5532 |
| chr16 | 4858480 | 5.38% | 5285 |
| chr17 | 6187319 | 7.43% | 6737 |
| chr18 | 2174801 | 2.71% | 3054 |
| chr19 | 5086252 | 8.68% | 4590 |
| chr20 | 3303317 | 5.13% | 3816 |
| chr21 | 1248584 | 2.67% | 1517 |
| chr22 | 2899819 | 5.71% | 3068 |
| chrX | 1671143 | 1.07% | 2315 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 141318 | 185 | 30939 | 800.83 | 516 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF578BTK.bed.gz | 3.5 MB | 7a9a211cee0c584f282e023cac9abb33 |
| ENCFF578BTK.tabix.bed.gz | 1.47 MB | e1cfdd0ec55fe660ce9b875d1b0c4ca8 |
| ENCFF578BTK.tabix.bed.gz.tbi | 173.66 KB | bcf206279aeb2088c24cd6418e4f2f5e |
| genomic_resource.yaml | 2.61 KB | b53595ed989e11fc86f1760893c9913e |
| statistics/ |