Resource
| Id | Histone_ChIP-seq/ENCSR708IFN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR708IFN [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male newborn output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN845UMC|/analyses/ENCAN845UMC/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF099JVJ|/files/ENCFF099JVJ/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 38610436 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR708IFN | float |
Histone_ChIP-seq_ENCSR708IFN |
Histone_ChIP-seq ENCSR708IFN [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K27me3"]
|
 |
[1.78, 15.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 74746118 | 2.32% | 101618 |
| chr1 | 7516145 | 3.02% | 9821 |
| chr2 | 5067512 | 2.09% | 7040 |
| chr3 | 3524124 | 1.78% | 5553 |
| chr4 | 2511021 | 1.32% | 3488 |
| chr5 | 3942297 | 2.17% | 5480 |
| chr6 | 3639892 | 2.13% | 5097 |
| chr7 | 3015921 | 1.89% | 4012 |
| chr8 | 3088453 | 2.13% | 4641 |
| chr9 | 3494501 | 2.53% | 4529 |
| chr10 | 4450982 | 3.33% | 6102 |
| chr11 | 5712370 | 4.23% | 7507 |
| chr12 | 3517179 | 2.64% | 4892 |
| chr13 | 1483617 | 1.30% | 2206 |
| chr14 | 2296436 | 2.15% | 3236 |
| chr15 | 2644414 | 2.59% | 3682 |
| chr16 | 2646749 | 2.93% | 3554 |
| chr17 | 4115507 | 4.94% | 4922 |
| chr18 | 2097514 | 2.61% | 3181 |
| chr19 | 2634307 | 4.49% | 3259 |
| chr20 | 3612529 | 5.61% | 4644 |
| chr21 | 831017 | 1.78% | 1176 |
| chr22 | 2563192 | 5.04% | 3126 |
| chrX | 331686 | 0.21% | 461 |
| chrY | 8753 | 0.02% | 9 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 101618 | 235 | 22977 | 735.56 | 505 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF598ONJ.bed.gz | 1.83 MB | 223304371e681e24a8608240e61f3bb7 |
| ENCFF598ONJ.tabix.bed.gz | 974.21 KB | d0990cc19c91db78b2a123692714b652 |
| ENCFF598ONJ.tabix.bed.gz.tbi | 223.17 KB | ef1fd532e57e4a6b8408afc3a4a8f897 |
| genomic_resource.yaml | 1.96 KB | 9fb789d166168ed1cffc60de9527d532 |
| statistics/ |