Resource

Id Histone_ChIP-seq/ENCSR706XFGcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR706XFG [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR706XFG
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2021-08-25T18:07:35.508806+00:00
  • date_released: 2021-09-21
  • doi: 10.17989/ENCSR706XFG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR706XFG float

Histone_ChIP-seq_ENCSR706XFG
Histone_ChIP-seq ENCSR706XFG [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR706XFG [1.78, 50.3]
n
56,289,220
mean
19.7
sd
10.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 562892201.75% 33379
chr1 5473046 2.20% 3226
chr2 3914692 1.62% 2322
chr3 3336116 1.68% 1885
chr4 2340265 1.23% 1361
chr5 2871575 1.58% 1665
chr6 3290922 1.93% 1965
chr7 2719026 1.71% 1733
chr8 2228432 1.54% 1296
chr9 2292648 1.66% 1389
chr10 2449437 1.83% 1477
chr11 3063160 2.27% 1745
chr12 2967971 2.23% 1666
chr13 1341005 1.17% 845
chr14 1817342 1.70% 1047
chr15 1755905 1.72% 1057
chr16 2160539 2.39% 1347
chr17 3075245 3.69% 1819
chr18 1066704 1.33% 652
chr19 3362197 5.74% 2008
chr20 1413945 2.19% 855
chr21 556831 1.19% 347
chr22 1250844 2.46% 751
chrX 1541373 0.99% 921
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 33379 215 29077 1686.37 1239
global segment-length histogram

Files

Filename Size md5
ENCFF186LFN.bed.gz 798.94 KB 20dbc096ff50f478e1152cc3a782d13f
ENCFF186LFN.tabix.bed.gz 367.19 KB c69b5044209fbda2cde652488c33249e
ENCFF186LFN.tabix.bed.gz.tbi 189.81 KB 0c7f231972b1a7e690399a3fd35cfadb
genomic_resource.yaml 1.75 KB 34b461f6d83d319c3b5e9a23f591e483
statistics/