Histone_ChIP-seq_ENCSR706RRA
Histone_ChIP-seq ENCSR706RRA [biosample_summary="Homo sapiens IMR-90" and target="H4K5ac"]
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| Id: | Histone_ChIP-seq/ENCSR706RRA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR706RRA [biosamplesummary="Homo sapiens IMR-90" and target="H4K5ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN152RKW|/analyses/ENCAN152RKW/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN152RKW|/analyses/ENCAN152RKW/} has in progress subobject document {91f05238-0c2e-4922-85a7-ce905d28e11f|/documents/91f05238-0c2e-4922-85a7-ce905d28e11f/} audit_warning: Processed alignments file {ENCFF095MHL|/files/ENCFF095MHL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 12219693 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K5ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF113XYR|/files/ENCFF113XYR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF113XYR|/files/ENCFF113XYR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.65. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR706RRA | float |
Histone_ChIP-seq_ENCSR706RRA |
Histone_ChIP-seq ENCSR706RRA [biosample_summary="Homo sapiens IMR-90" and target="H4K5ac"]
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[1.56, 21.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF742PFJ.bed.gz | 3.27 MB | f8dcc13b8d37cfdd3f16c8d8ad5b513c |
| ENCFF742PFJ.bed.gz.dvc | 101.0 B | 93033fe5e9c17d93d46fde3e8df7f317 |
| ENCFF742PFJ.tabix.bed.gz | 1.42 MB | d33cd056ef3068a270c840e968d580d5 |
| ENCFF742PFJ.tabix.bed.gz.dvc | 107.0 B | 7e0af219091b3cc63520bc8723f281c5 |
| ENCFF742PFJ.tabix.bed.gz.tbi | 287.06 KB | d75d341c5cb5e08b6d91cf59368e559c |
| ENCFF742PFJ.tabix.bed.gz.tbi.dvc | 110.0 B | f7140df37d6f2959683ff98f9f3d0eae |
| genomic_resource.yaml | 3.41 KB | 69b99322c4e2702bc99118970373a4ea |
| genomic_resource_original.yaml | 3.3 KB | 06c0420b4ff61b51502539809cb909c0 |
| statistics/ |