Histone_ChIP-seq_ENCSR704JQF
Histone_ChIP-seq ENCSR704JQF [biosample_summary="Homo sapiens heart left ventricle tissue male adult (69 years)" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR704JQF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR704JQF [biosamplesummary="Homo sapiens heart left ventricle tissue male adult (69 years)" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (69 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN681ZVX|/analyses/ENCAN681ZVX/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF507OYY|/files/ENCFF507OYY/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF507OYY|/files/ENCFF507OYY/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.52. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR704JQF | float |
Histone_ChIP-seq_ENCSR704JQF |
Histone_ChIP-seq ENCSR704JQF [biosample_summary="Homo sapiens heart left ventricle tissue male adult (69 years)" and target="H3K36me3"]
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[1.63, 16.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF693GML.bed.gz | 2.3 MB | 7a3d490570e7605ca29d6b7ad6ed67dd |
| ENCFF693GML.bed.gz.dvc | 101.0 B | ccefc6ea2e76a4795ac6860b708a91c8 |
| ENCFF693GML.tabix.bed.gz | 1.06 MB | 8f141a7dfe6d50636215d2ed6a71889a |
| ENCFF693GML.tabix.bed.gz.dvc | 107.0 B | bf8e5755813f56b0ecf055c8e0e437fb |
| ENCFF693GML.tabix.bed.gz.tbi | 152.52 KB | 9dc08186ac032527d69bc72191125402 |
| ENCFF693GML.tabix.bed.gz.tbi.dvc | 110.0 B | 3f6131a6d44c4e389abb3d302e8eccb2 |
| genomic_resource.yaml | 2.79 KB | 7fb5da3d95e5b0880f37663025e659ed |
| genomic_resource_original.yaml | 2.65 KB | 86246848d7cebf76211a7ea85245c487 |
| statistics/ |