Resource

Id Histone_ChIP-seq/ENCSR703AIOcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR703AIO [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR703AIO
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2022-05-11T01:53:48.460032+00:00
  • date_released: 2022-06-09
  • doi: 10.17989/ENCSR703AIO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female adult (90 or above years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR703AIO float

Histone_ChIP-seq_ENCSR703AIO
Histone_ChIP-seq ENCSR703AIO [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR703AIO [1.77, 65.1]
n
66,294,556
mean
25.1
sd
15.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 662945562.06% 37609
chr1 6471419 2.60% 3602
chr2 4655207 1.92% 2698
chr3 3934758 1.98% 2175
chr4 2759383 1.45% 1607
chr5 3377687 1.86% 1920
chr6 3863241 2.26% 2223
chr7 3235029 2.03% 1962
chr8 2644891 1.82% 1527
chr9 2769438 2.00% 1614
chr10 2935294 2.19% 1696
chr11 3561296 2.64% 1922
chr12 3457798 2.59% 1851
chr13 1569847 1.37% 970
chr14 2111599 1.97% 1187
chr15 2056453 2.02% 1188
chr16 2533980 2.80% 1481
chr17 3594396 4.32% 1937
chr18 1293415 1.61% 784
chr19 3846457 6.56% 2097
chr20 1678291 2.60% 972
chr21 674048 1.44% 403
chr22 1457414 2.87% 798
chrX 1813215 1.16% 995
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 37609 233 35495 1762.73 1240
global segment-length histogram

Files

Filename Size md5
ENCFF564OVM.bed.gz 928.74 KB 5dd311f285467eedeba900608d1b812c
ENCFF564OVM.tabix.bed.gz 418.12 KB 7d07cd69967c714eed4d3c9dec07694f
ENCFF564OVM.tabix.bed.gz.tbi 210.13 KB 6e72ebf7d0a47f85c1f8562da77cb0bd
genomic_resource.yaml 1.75 KB 4551e24a5b81f76f31401a35a91210da
statistics/