Resource

Id Histone_ChIP-seq/ENCSR701GIEcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR701GIE [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue female adult (51 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR701GIE
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004648/
  • biosample_summary: Homo sapiens esophagus muscularis mucosa tissue female adult (51 years)
  • date_created: 2018-05-11T18:46:40.222625+00:00
  • date_released: 2018-12-19
  • doi: 10.17989/ENCSR701GIE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR701GIE float

Histone_ChIP-seq_ENCSR701GIE
Histone_ChIP-seq ENCSR701GIE [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue female adult (51 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR701GIE [1.57, 15.7]
n
200,197,732
mean
5.04
sd
1.88

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2001977326.22% 144148
chr1 19976886 8.02% 13659
chr1_KI270712v1_random 4247 2.41% 5
chr1_KI270713v1_random 749 1.84% 2
chr1_KI270714v1_random 880 2.11% 2
chr2 16373924 6.76% 11901
chr3 14460866 7.29% 10563
chr4 8798459 4.63% 7117
chr5 10235640 5.64% 7774
chr6 10518604 6.16% 8370
chr7 9951756 6.25% 7463
chr8 8407113 5.79% 6328
chr9 9353601 6.76% 6518
chr10 11559067 8.64% 8029
chr11 10582489 7.83% 7144
chr12 10122728 7.60% 7322
chr13 4752095 4.16% 3572
chr14 6856686 6.41% 4754
chr15 7231488 7.09% 5130
chr16 6550729 7.25% 4453
chr17 9557771 11.48% 6058
chr17_GL000205v2_random 1739 0.94% 1
chr18 3740627 4.65% 2976
chr19 6869304 11.72% 4415
chr20 5532371 8.58% 3771
chr21 1956838 4.19% 1501
chr22 4488535 8.83% 2902
chrUn_GL000195v1 1624 0.89% 3
chrUn_GL000219v1 6009 3.35% 8
chrX 2304907 1.48% 2407
3337 contigs with no values (185498310 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 144148 240 53307 1388.83 967
global segment-length histogram

Files

Filename Size md5
ENCFF403NXQ.bed.gz 3.22 MB a76ae9364b937b909b2a5362e426e9c5
ENCFF403NXQ.tabix.bed.gz 1.49 MB 4429fde31540302e195a7045c83b3ee2
ENCFF403NXQ.tabix.bed.gz.tbi 330.79 KB c37614aa21be1db06364f598df66c230
genomic_resource.yaml 1.56 KB 0ab06cf383de1a816967124f6d267260
statistics/