Resource

Id Histone_ChIP-seq/ENCSR701FGAcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR701FGA [biosample_summary="Homo sapiens upper lobe of left lung tissue male adult (54 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR701FGA
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0008952/
  • biosample_summary: Homo sapiens upper lobe of left lung tissue male adult (54 years)
  • date_created: 2017-12-06T21:03:23.789231+00:00
  • date_released: 2019-02-12
  • doi: 10.17989/ENCSR701FGA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR701FGA float

Histone_ChIP-seq_ENCSR701FGA
Histone_ChIP-seq ENCSR701FGA [biosample_summary="Homo sapiens upper lobe of left lung tissue male adult (54 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR701FGA [1.14, 70]
n
47,741,461
mean
30.9
sd
17.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 477414611.48% 28233
chr1 4728300 1.90% 2771
chr2 3239474 1.34% 1931
chr3 2684226 1.35% 1556
chr4 1933730 1.02% 1135
chr5 2249351 1.24% 1319
chr6 2773365 1.62% 1628
chr7 2376892 1.49% 1430
chr8 1770920 1.22% 1099
chr9 1975652 1.43% 1191
chr10 2034710 1.52% 1228
chr11 2516218 1.86% 1414
chr12 2517008 1.89% 1433
chr13 1018156 0.89% 626
chr14 1524384 1.42% 843
chr15 1515229 1.49% 894
chr16 1920154 2.13% 1143
chr17 2810782 3.38% 1629
chr18 813496 1.01% 513
chr19 3056724 5.21% 1858
chr20 1243848 1.93% 729
chr21 516115 1.10% 327
chr22 1098398 2.16% 667
chrX 1368992 0.88% 835
chrY 55337 0.10% 34
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 28233 215 19534 1690.98 1438
global segment-length histogram

Files

Filename Size md5
ENCFF481TTY.bed.gz 771.08 KB 625684487c905d837381406586b60722
ENCFF481TTY.tabix.bed.gz 327.4 KB 48d8c1f7681202897d078cd7dd992873
ENCFF481TTY.tabix.bed.gz.tbi 178.34 KB 49b777f5f627a434d3a40461c9313d19
genomic_resource.yaml 1.54 KB 58e3e654d6a68c5bce8bfa80cbfd8aca
statistics/