Histone_ChIP-seq_ENCSR700ZDF
Histone_ChIP-seq ENCSR700ZDF [biosample_summary="Homo sapiens heart right ventricle tissue male adult (66 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR700ZDF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR700ZDF [biosamplesummary="Homo sapiens heart right ventricle tissue male adult (66 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (66 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN228BZI|/analyses/ENCAN228BZI/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF426GGA|/files/ENCFF426GGA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF426GGA|/files/ENCFF426GGA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.65. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR700ZDF | float |
Histone_ChIP-seq_ENCSR700ZDF |
Histone_ChIP-seq ENCSR700ZDF [biosample_summary="Homo sapiens heart right ventricle tissue male adult (66 years)" and target="H3K4me3"]
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[1.83, 89.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF777VCH.bed.gz | 834.37 KB | 6c5e2468463c737667691befec2ac8f0 |
| ENCFF777VCH.bed.gz.dvc | 100.0 B | 0d6874d10f0f7d845f1b453d6c9a6073 |
| ENCFF777VCH.tabix.bed.gz | 360.04 KB | 457f027aeca78074a0562dbaf10219ba |
| ENCFF777VCH.tabix.bed.gz.dvc | 106.0 B | 3ec055181784eb56eaffa01ad55c8a00 |
| ENCFF777VCH.tabix.bed.gz.tbi | 188.92 KB | 6b5b2805099ef4831d039b4dd38ed93a |
| ENCFF777VCH.tabix.bed.gz.tbi.dvc | 110.0 B | b2e3534b9a27a5e314a5ca0af5a618bd |
| genomic_resource.yaml | 2.79 KB | b6c8a136feac52f6ff2e5d557dc9912d |
| genomic_resource_original.yaml | 2.65 KB | 15bd292dba8017f4c37ac5f85ea8d113 |
| statistics/ |