Resource
| Id | Histone_ChIP-seq/ENCSR700ZDF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR700ZDF [biosample_summary="Homo sapiens heart right ventricle tissue male adult (66 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (66 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN228BZI|/analyses/ENCAN228BZI/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF426GGA|/files/ENCFF426GGA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF426GGA|/files/ENCFF426GGA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.65. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR700ZDF | float |
Histone_ChIP-seq_ENCSR700ZDF |
Histone_ChIP-seq ENCSR700ZDF [biosample_summary="Homo sapiens heart right ventricle tissue male adult (66 years)" and target="H3K4me3"]
|
 |
[1.83, 89.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 54680712 | 1.70% | 31183 |
| chr1 | 5399317 | 2.17% | 2984 |
| chr2 | 3759626 | 1.55% | 2159 |
| chr3 | 3205444 | 1.62% | 1751 |
| chr4 | 2333793 | 1.23% | 1308 |
| chr5 | 2717355 | 1.50% | 1484 |
| chr6 | 3195996 | 1.87% | 1780 |
| chr7 | 2671155 | 1.68% | 1572 |
| chr8 | 2143138 | 1.48% | 1231 |
| chr9 | 2297710 | 1.66% | 1359 |
| chr10 | 2490039 | 1.86% | 1441 |
| chr11 | 2901080 | 2.15% | 1616 |
| chr12 | 2905863 | 2.18% | 1567 |
| chr13 | 1238656 | 1.08% | 743 |
| chr14 | 1680368 | 1.57% | 939 |
| chr15 | 1777230 | 1.74% | 1002 |
| chr16 | 2048916 | 2.27% | 1238 |
| chr17 | 3006510 | 3.61% | 1699 |
| chr18 | 1006666 | 1.25% | 598 |
| chr19 | 3173938 | 5.41% | 1892 |
| chr20 | 1383652 | 2.15% | 812 |
| chr21 | 541374 | 1.16% | 349 |
| chr22 | 1198476 | 2.36% | 713 |
| chrX | 1548127 | 0.99% | 919 |
| chrY | 56283 | 0.10% | 27 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 31183 | 255 | 24439 | 1753.54 | 1351 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF777VCH.bed.gz | 834.37 KB | 6c5e2468463c737667691befec2ac8f0 |
| ENCFF777VCH.tabix.bed.gz | 360.04 KB | 457f027aeca78074a0562dbaf10219ba |
| ENCFF777VCH.tabix.bed.gz.tbi | 188.92 KB | 6b5b2805099ef4831d039b4dd38ed93a |
| genomic_resource.yaml | 2.79 KB | b6c8a136feac52f6ff2e5d557dc9912d |
| statistics/ |