Resource
| Id | Histone_ChIP-seq/ENCSR700VCN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR700VCN [biosample_summary="Homo sapiens GM23338 originated from GM23248" and target="H3K9me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN915YMA|/analyses/ENCAN915YMA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF183PKF|/files/ENCFF183PKF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 22105296 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF003AVG|/files/ENCFF003AVG/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 28872491 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR700VCN | float |
Histone_ChIP-seq_ENCSR700VCN |
Histone_ChIP-seq ENCSR700VCN [biosample_summary="Homo sapiens GM23338 originated from GM23248" and target="H3K9me2"]
|
 |
[1.59, 8.15] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 44978794 | 1.40% | 87440 |
| chr1 | 3510183 | 1.41% | 6816 |
| chr2 | 4405492 | 1.82% | 8521 |
| chr3 | 3682849 | 1.86% | 7100 |
| chr4 | 3380460 | 1.78% | 6673 |
| chr5 | 3389333 | 1.87% | 6621 |
| chr6 | 2885204 | 1.69% | 5680 |
| chr7 | 2317781 | 1.45% | 4508 |
| chr8 | 2628240 | 1.81% | 5052 |
| chr9 | 1874634 | 1.35% | 3591 |
| chr10 | 2217570 | 1.66% | 4386 |
| chr11 | 2143347 | 1.59% | 4150 |
| chr12 | 2075237 | 1.56% | 4055 |
| chr13 | 1706580 | 1.49% | 3327 |
| chr14 | 1498458 | 1.40% | 2898 |
| chr15 | 1213556 | 1.19% | 2365 |
| chr16 | 1157957 | 1.28% | 2226 |
| chr17 | 837137 | 1.01% | 1638 |
| chr18 | 1397777 | 1.74% | 2717 |
| chr19 | 464352 | 0.79% | 917 |
| chr20 | 1126725 | 1.75% | 2120 |
| chr21 | 712187 | 1.52% | 1336 |
| chr22 | 238977 | 0.47% | 481 |
| chrX | 106551 | 0.07% | 242 |
| chrY | 8207 | 0.01% | 20 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 87440 | 175 | 3364 | 514.4 | 450 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF374IVL.bed.gz | 1.7 MB | 2375814a6e9c19c0f0e66b4458d77214 |
| ENCFF374IVL.tabix.bed.gz | 853.64 KB | 717567b00fe9de22ada5835f17502ba5 |
| ENCFF374IVL.tabix.bed.gz.tbi | 385.21 KB | 0984b27e47cc0edf2009724a8510cda8 |
| genomic_resource.yaml | 2.46 KB | a3f347d2c5d3f1231b2af1af4fe8a8a0 |
| statistics/ |