Resource

Id Histone_ChIP-seq/ENCSR700LWIcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR700LWI [biosample_summary="Homo sapiens with squamous cell carcinoma; skin epidermis tissue female adult (64 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR700LWI
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001003/
  • biosample_summary: Homo sapiens with squamous cell carcinoma; skin epidermis tissue female adult (64 years)
  • date_created: 2020-07-02T16:41:25.064889+00:00
  • date_released: 2020-09-10
  • doi: 10.17989/ENCSR700LWI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (64 years) with squamous cell carcinoma
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR700LWI float

Histone_ChIP-seq_ENCSR700LWI
Histone_ChIP-seq ENCSR700LWI [biosample_summary="Homo sapiens with squamous cell carcinoma; skin epidermis tissue female adult (64 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR700LWI [1.74, 54.1]
n
105,847,412
mean
10.2
sd
7.43

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1058474123.29% 69278
chr1 11012711 4.42% 6932
chr2 8629104 3.56% 5700
chr3 6541843 3.30% 4299
chr4 3528632 1.86% 2529
chr5 4970013 2.74% 3263
chr6 6279831 3.68% 4146
chr7 4455051 2.80% 3071
chr8 4001392 2.76% 2915
chr9 4681156 3.38% 3103
chr10 5266024 3.94% 3524
chr11 5578265 4.13% 3497
chr12 5646110 4.24% 3556
chr13 2172868 1.90% 1463
chr14 3947151 3.69% 2404
chr15 3533580 3.46% 2330
chr16 4067101 4.50% 2753
chr17 5961236 7.16% 3651
chr18 2011570 2.50% 1418
chr19 4653184 7.94% 2881
chr20 3027628 4.70% 1953
chr21 1352952 2.90% 957
chr22 2580153 5.08% 1613
chrX 1949857 1.25% 1320
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 69278 245 55975 1527.86 1023
global segment-length histogram

Files

Filename Size md5
ENCFF489GFM.bed.gz 1.59 MB a333fb3fbc73144c931f4ecb4691e2e1
ENCFF489GFM.tabix.bed.gz 745.9 KB d679f78888bf29b01f7b4fbc7f2e02c8
ENCFF489GFM.tabix.bed.gz.tbi 233.78 KB fd014d5771f01062d9e6011c05f8c607
genomic_resource.yaml 1.88 KB 71a4eabd8a660914f46c80eae70fb9c3
statistics/