Resource
| Id | Histone_ChIP-seq/ENCSR697YSL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR697YSL [biosample_summary="Homo sapiens stomach tissue female embryo (98 days)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (98 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN984POO|/analyses/ENCAN984POO/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN984POO|/analyses/ENCAN984POO/} has in progress subobject document {5eebcd87-9133-4f5d-b088-9c6fd9800aaf|/documents/5eebcd87-9133-4f5d-b088-9c6fd9800aaf/} audit_not_compliant: Processed alignments file {ENCFF635GQG|/files/ENCFF635GQG/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 30482696 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR697YSL | float |
Histone_ChIP-seq_ENCSR697YSL |
Histone_ChIP-seq ENCSR697YSL [biosample_summary="Homo sapiens stomach tissue female embryo (98 days)" and target="H3K36me3"]
|
 |
[1.8, 28.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 142643533 | 4.43% | 216347 |
| chr1 | 13627872 | 5.47% | 21372 |
| chr2 | 9512426 | 3.93% | 16982 |
| chr3 | 7961254 | 4.01% | 13582 |
| chr4 | 4497891 | 2.36% | 8254 |
| chr5 | 5815478 | 3.20% | 10213 |
| chr6 | 5521284 | 3.23% | 9795 |
| chr7 | 7143159 | 4.48% | 10787 |
| chr8 | 4372807 | 3.01% | 7537 |
| chr9 | 6897945 | 4.98% | 9767 |
| chr10 | 6597778 | 4.93% | 10982 |
| chr11 | 7647002 | 5.66% | 10818 |
| chr12 | 7307348 | 5.48% | 10910 |
| chr13 | 2382477 | 2.08% | 4599 |
| chr14 | 4745854 | 4.43% | 7784 |
| chr15 | 5042639 | 4.94% | 8685 |
| chr16 | 7734134 | 8.56% | 9282 |
| chr17 | 9604470 | 11.54% | 12305 |
| chr18 | 2094354 | 2.61% | 4031 |
| chr19 | 10364537 | 17.68% | 10260 |
| chr20 | 4976720 | 7.72% | 6885 |
| chr21 | 1725659 | 3.69% | 2432 |
| chr22 | 5009456 | 9.86% | 5568 |
| chrX | 2060989 | 1.32% | 3517 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 216347 | 165 | 30413 | 659.33 | 416 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF557LHI.bed.gz | 4.31 MB | 68203a17a90b42e7cb3ca1a1e81d819c |
| ENCFF557LHI.tabix.bed.gz | 2.05 MB | 1b28e08f94f446fd4f819ac72aeee61a |
| ENCFF557LHI.tabix.bed.gz.tbi | 229.14 KB | 5a20947256b5a929b82afd83716b911e |
| genomic_resource.yaml | 2.2 KB | 25549160dbbeb87bf076922ee860fde0 |
| statistics/ |