Histone_ChIP-seq_ENCSR697RIW
Histone_ChIP-seq ENCSR697RIW [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (54 years)" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR697RIW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR697RIW [biosamplesummary="Homo sapiens gastrocnemius medialis tissue male adult (54 years)" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (54 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN927WMS|/analyses/ENCAN927WMS/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed unfiltered alignments file {ENCFF298PEP|/files/ENCFF298PEP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 29224825 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF635GWY|/files/ENCFF635GWY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF635GWY|/files/ENCFF635GWY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.57. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR697RIW | float |
Histone_ChIP-seq_ENCSR697RIW |
Histone_ChIP-seq ENCSR697RIW [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (54 years)" and target="H3K9me3"]
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[1.22, 11.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF451XSY.bed.gz | 923.55 KB | 281fe3079a636460fa088ee281c9ccd0 |
| ENCFF451XSY.bed.gz.dvc | 100.0 B | 31499e3c7f174697fff4b9ed28a7146f |
| ENCFF451XSY.tabix.bed.gz | 471.22 KB | c4827b958deef7fa5f84cc0ce7e4309a |
| ENCFF451XSY.tabix.bed.gz.dvc | 106.0 B | 36365e26b26f34dad2b0146ca080f111 |
| ENCFF451XSY.tabix.bed.gz.tbi | 212.88 KB | 67322b030e6ef31eaa7b4ba2068275da |
| ENCFF451XSY.tabix.bed.gz.tbi.dvc | 110.0 B | 04099c7299f6054da2e68566bfe953dd |
| genomic_resource.yaml | 3.27 KB | 5357683a5d9f92cedde2fd858539715b |
| genomic_resource_original.yaml | 3.12 KB | 59e6964a6da9a091329f2a5e157f6539 |
| statistics/ |