Resource

Id Histone_ChIP-seq/ENCSR697GPOcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR697GPO [biosample_summary="Homo sapiens esophagus tissue female adult (30 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR697GPO
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001043/
  • biosample_summary: Homo sapiens esophagus tissue female adult (30 years)
  • date_created: 2015-10-01T07:16:07.314646+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR697GPO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (30 years)
  • status: released
  • submitter_comment: An error has been identified on one more protocol documents in this experiment regarding the antibody specifications. Please refer to the external references for the correct information.
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR697GPO float

Histone_ChIP-seq_ENCSR697GPO
Histone_ChIP-seq ENCSR697GPO [biosample_summary="Homo sapiens esophagus tissue female adult (30 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR697GPO [1.54, 70]
n
39,699,173
mean
22.1
sd
12.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 396991731.23% 26434
chr1 4006182 1.61% 2636
chr2 2735128 1.13% 1812
chr3 2283023 1.15% 1517
chr4 1662608 0.87% 1104
chr5 1862521 1.03% 1174
chr6 2336245 1.37% 1536
chr7 1892995 1.19% 1315
chr8 1454945 1.00% 949
chr9 1649461 1.19% 1093
chr10 1698371 1.27% 1128
chr11 2157340 1.60% 1384
chr12 2074948 1.56% 1316
chr13 832786 0.73% 564
chr14 1356826 1.27% 891
chr15 1314666 1.29% 861
chr16 1501343 1.66% 980
chr17 2292354 2.75% 1513
chr18 700733 0.87% 462
chr19 2467374 4.21% 1823
chr20 1023726 1.59% 660
chr21 415718 0.89% 271
chr22 870107 1.71% 612
chrX 1108922 0.71% 832
chrY 851 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 26434 195 15537 1501.82 1263
global segment-length histogram

Files

Filename Size md5
ENCFF350WAT.bed.gz 721.87 KB 4d227bb9be44b27f9fe8c17c14709a0e
ENCFF350WAT.tabix.bed.gz 306.86 KB ab9ab08b10c03f2646d46fbe5f8b2747
ENCFF350WAT.tabix.bed.gz.tbi 156.63 KB d813ad3cec0c023facce4f7f1bd7bf60
genomic_resource.yaml 1.69 KB f05af9ac71c089f185cb26c63963ed47
statistics/