Histone_ChIP-seq_ENCSR694RCH
Histone_ChIP-seq ENCSR694RCH [biosample_summary="Homo sapiens muscle layer of duodenum tissue male adult (59 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR694RCH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR694RCH [biosamplesummary="Homo sapiens muscle layer of duodenum tissue male adult (59 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (59 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN729RLO|/analyses/ENCAN729RLO/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF630DOD|/files/ENCFF630DOD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF630DOD|/files/ENCFF630DOD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.95. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR694RCH | float |
Histone_ChIP-seq_ENCSR694RCH |
Histone_ChIP-seq ENCSR694RCH [biosample_summary="Homo sapiens muscle layer of duodenum tissue male adult (59 years)" and target="H3K27ac"]
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[1.94, 66.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF693RYI.bed.gz | 1.19 MB | a9009c74d11bab86ba99913fc10c49b4 |
| ENCFF693RYI.bed.gz.dvc | 101.0 B | 25b71f2190951a9df199e2e6056c4b70 |
| ENCFF693RYI.tabix.bed.gz | 573.17 KB | 6681c25427867886fdd145b4835f7519 |
| ENCFF693RYI.tabix.bed.gz.dvc | 106.0 B | afb316c86c94d33e61a85872c87f2a10 |
| ENCFF693RYI.tabix.bed.gz.tbi | 200.23 KB | 9e9017fb301a171556717e2bd7ddfde8 |
| ENCFF693RYI.tabix.bed.gz.tbi.dvc | 110.0 B | e80c385669da001439120a196cbc7422 |
| genomic_resource.yaml | 2.81 KB | b6067d3d5c75fd3c445b5eb36b0ce195 |
| genomic_resource_original.yaml | 2.66 KB | dee88b0b7a3a8d073a2c1ddaff29c447 |
| statistics/ |