Histone_ChIP-seq_ENCSR694LBI
Histone_ChIP-seq ENCSR694LBI [biosample_summary="Homo sapiens neuronal stem cell originated from H1" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR694LBI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR694LBI [biosamplesummary="Homo sapiens neuronal stem cell originated from H1" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN496SMW|/analyses/ENCAN496SMW/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN496SMW|/analyses/ENCAN496SMW/} has in progress subobject document {4c2927b2-4073-4a2f-b7a9-fb1a7a3f7257|/documents/4c2927b2-4073-4a2f-b7a9-fb1a7a3f7257/} audit_not_compliant: Processed alignments file {ENCFF391VPZ|/files/ENCFF391VPZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 16670228 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF683OOP|/files/ENCFF683OOP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF683OOP|/files/ENCFF683OOP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.55. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF391VPZ|/files/ENCFF391VPZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF391VPZ|/files/ENCFF391VPZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR694LBI | float |
Histone_ChIP-seq_ENCSR694LBI |
Histone_ChIP-seq ENCSR694LBI [biosample_summary="Homo sapiens neuronal stem cell originated from H1" and target="H3K27me3"]
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[1.36, 23.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF573HEY.bed.gz | 763.43 KB | 37239cdbac41ee94f63879931091739b |
| ENCFF573HEY.bed.gz.dvc | 100.0 B | 6eb8833689c4b0d3ae5aeb5967a9b1c5 |
| ENCFF573HEY.tabix.bed.gz | 349.39 KB | c57f903d01a21080d654f77dd09c28d6 |
| ENCFF573HEY.tabix.bed.gz.dvc | 106.0 B | 89a115f16584e674fb3c4517f85df9a4 |
| ENCFF573HEY.tabix.bed.gz.tbi | 125.73 KB | 8df4b55d6730b39828f9ba03eac14963 |
| ENCFF573HEY.tabix.bed.gz.tbi.dvc | 110.0 B | 516117e925f61637b73bc0ee2df6207e |
| genomic_resource.yaml | 4.73 KB | 65dca6e59ce581145f150c9fa81e407a |
| genomic_resource_original.yaml | 4.6 KB | d7034e8eabbd6a5de1d19b293749a3ff |
| statistics/ |