Resource
| Id | Histone_ChIP-seq/ENCSR694CDP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR694CDP [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN626MOU|/analyses/ENCAN626MOU/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF915WAU|/files/ENCFF915WAU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 17509353 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed redacted alignments file {ENCFF130OEZ|/files/ENCFF130OEZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 20306575 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR694CDP | float |
Histone_ChIP-seq_ENCSR694CDP |
Histone_ChIP-seq ENCSR694CDP [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell" and target="H3K36me3"]
|
 |
[1.62, 12] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 53443410 | 1.66% | 73403 |
| chr1 | 5438381 | 2.18% | 7274 |
| chr2 | 4306243 | 1.78% | 6065 |
| chr3 | 3235485 | 1.63% | 4636 |
| chr4 | 1756823 | 0.92% | 2693 |
| chr5 | 2865157 | 1.58% | 3973 |
| chr6 | 2445607 | 1.43% | 3496 |
| chr7 | 2129418 | 1.34% | 3037 |
| chr8 | 1639730 | 1.13% | 2440 |
| chr9 | 2384084 | 1.72% | 3145 |
| chr10 | 2117894 | 1.58% | 3035 |
| chr11 | 2955632 | 2.19% | 3788 |
| chr12 | 3050156 | 2.29% | 4148 |
| chr13 | 1082065 | 0.95% | 1627 |
| chr14 | 2021403 | 1.89% | 2778 |
| chr15 | 1842617 | 1.81% | 2652 |
| chr16 | 2463875 | 2.73% | 3175 |
| chr17 | 3262776 | 3.92% | 4253 |
| chr18 | 809814 | 1.01% | 1259 |
| chr19 | 2905146 | 4.96% | 3657 |
| chr20 | 1779672 | 2.76% | 2290 |
| chr21 | 711780 | 1.52% | 973 |
| chr22 | 1565526 | 3.08% | 1904 |
| chrX | 640010 | 0.41% | 1043 |
| chrY | 34116 | 0.06% | 62 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 73403 | 215 | 11389 | 728.08 | 568 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF430GVA.bed.gz | 1.53 MB | d2b5c5ec864c17c4e3be782841faea31 |
| ENCFF430GVA.tabix.bed.gz | 747.72 KB | 1353e0996b898e4d414a88373ca9f401 |
| ENCFF430GVA.tabix.bed.gz.tbi | 137.53 KB | 2207e3f7dfb9487c0f35334e5a7e7f88 |
| genomic_resource.yaml | 2.54 KB | 494c923d8aa402a70ce3a1c27dd1b11c |
| statistics/ |