Resource
| Id | Histone_ChIP-seq/ENCSR693VHX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR693VHX [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: male newborn output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN473IOM|/analyses/ENCAN473IOM/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF813QEC|/files/ENCFF813QEC/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF813QEC|/files/ENCFF813QEC/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.79. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR693VHX | float |
Histone_ChIP-seq_ENCSR693VHX |
Histone_ChIP-seq ENCSR693VHX [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K27ac"]
|
 |
[1.73, 36.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 18067245 | 0.56% | 41392 |
| chr1 | 1847257 | 0.74% | 4224 |
| chr2 | 1312799 | 0.54% | 2879 |
| chr3 | 1034753 | 0.52% | 2346 |
| chr4 | 576159 | 0.30% | 1303 |
| chr5 | 800539 | 0.44% | 1794 |
| chr6 | 995842 | 0.58% | 2146 |
| chr7 | 786983 | 0.49% | 1853 |
| chr8 | 709990 | 0.49% | 1633 |
| chr9 | 779121 | 0.56% | 1803 |
| chr10 | 799069 | 0.60% | 1849 |
| chr11 | 1085591 | 0.80% | 2465 |
| chr12 | 929382 | 0.70% | 2097 |
| chr13 | 344322 | 0.30% | 759 |
| chr14 | 660841 | 0.62% | 1427 |
| chr15 | 603155 | 0.59% | 1446 |
| chr16 | 785280 | 0.87% | 1916 |
| chr17 | 1205750 | 1.45% | 2773 |
| chr18 | 315890 | 0.39% | 672 |
| chr19 | 1109716 | 1.89% | 2615 |
| chr20 | 486382 | 0.75% | 1186 |
| chr21 | 191693 | 0.41% | 454 |
| chr22 | 493225 | 0.97% | 1249 |
| chrX | 207224 | 0.13% | 492 |
| chrY | 6282 | 0.01% | 11 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 41392 | 135 | 9742 | 436.49 | 327 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF200EDZ.bed.gz | 816.67 KB | f019c1008defe34b81d992d5a66437ea |
| ENCFF200EDZ.tabix.bed.gz | 405.17 KB | b4445f352e682c3cf196c769e20699ed |
| ENCFF200EDZ.tabix.bed.gz.tbi | 181.05 KB | baa758824c6194f4a31bb9e10f4db027 |
| genomic_resource.yaml | 2.74 KB | 98eb2b4cfedd494c8239a9ad5ff14e4c |
| statistics/ |