Histone_ChIP-seq_ENCSR693VHX
Histone_ChIP-seq ENCSR693VHX [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR693VHX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR693VHX [biosamplesummary="Homo sapiens foreskin melanocyte male newborn" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male newborn output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN473IOM|/analyses/ENCAN473IOM/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF813QEC|/files/ENCFF813QEC/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF813QEC|/files/ENCFF813QEC/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.79. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR693VHX | float |
Histone_ChIP-seq_ENCSR693VHX |
Histone_ChIP-seq ENCSR693VHX [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K27ac"]
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[1.73, 36.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF200EDZ.bed.gz | 816.67 KB | f019c1008defe34b81d992d5a66437ea |
| ENCFF200EDZ.bed.gz.dvc | 100.0 B | eb123c4068a9cd8551d5c3e964178049 |
| ENCFF200EDZ.tabix.bed.gz | 405.17 KB | b4445f352e682c3cf196c769e20699ed |
| ENCFF200EDZ.tabix.bed.gz.dvc | 106.0 B | 572c2e093ec19173a167098395cb5151 |
| ENCFF200EDZ.tabix.bed.gz.tbi | 181.05 KB | baa758824c6194f4a31bb9e10f4db027 |
| ENCFF200EDZ.tabix.bed.gz.tbi.dvc | 110.0 B | 9b3ebebae1e0196392ce7cc56f360752 |
| genomic_resource.yaml | 2.74 KB | 98eb2b4cfedd494c8239a9ad5ff14e4c |
| genomic_resource_original.yaml | 2.61 KB | 0214dd693d19418597604845ecc4b430 |
| statistics/ |