Resource
| Id | Histone_ChIP-seq/ENCSR691IZA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR691IZA [biosample_summary="Homo sapiens layer of hippocampus tissue male adult (73 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (73 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN097MGN|/analyses/ENCAN097MGN/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF837LRL|/files/ENCFF837LRL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 21028023 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR691IZA | float |
Histone_ChIP-seq_ENCSR691IZA |
Histone_ChIP-seq ENCSR691IZA [biosample_summary="Homo sapiens layer of hippocampus tissue male adult (73 years)" and target="H3K36me3"]
|
 |
[1.84, 18.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 57132627 | 1.78% | 66613 |
| chr1 | 5860886 | 2.35% | 6757 |
| chr1_KI270711v1_random | 454 | 1.08% | 1 |
| chr2 | 3849784 | 1.59% | 4836 |
| chr3 | 3281667 | 1.65% | 4004 |
| chr4 | 1776564 | 0.93% | 2357 |
| chr5 | 2459600 | 1.35% | 3128 |
| chr6 | 2379862 | 1.39% | 2972 |
| chr7 | 2334848 | 1.47% | 2895 |
| chr8 | 1700589 | 1.17% | 2176 |
| chr9 | 2817535 | 2.04% | 3135 |
| chr10 | 2212319 | 1.65% | 2779 |
| chr11 | 3343619 | 2.48% | 3707 |
| chr12 | 3186476 | 2.39% | 3595 |
| chr13 | 899522 | 0.79% | 1220 |
| chr14 | 1902288 | 1.78% | 2298 |
| chr15 | 2079717 | 2.04% | 2485 |
| chr16 | 3024932 | 3.35% | 3166 |
| chr17 | 3747323 | 4.50% | 4047 |
| chr18 | 788424 | 0.98% | 1044 |
| chr19 | 4386417 | 7.48% | 4387 |
| chr20 | 2070945 | 3.21% | 2273 |
| chr21 | 676473 | 1.45% | 791 |
| chr22 | 1881657 | 3.70% | 1910 |
| chrX | 459780 | 0.29% | 635 |
| chrY | 10946 | 0.02% | 15 |
| 3341 contigs with no values (129034875 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 66613 | 230 | 13460 | 857.68 | 669 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF513BOF.bed.gz | 1.29 MB | 43f15d1ab16836ecf954231b8bc42e37 |
| ENCFF513BOF.tabix.bed.gz | 662.54 KB | 91ef89e32713f6dabe20d40081ebf8c1 |
| ENCFF513BOF.tabix.bed.gz.tbi | 146.95 KB | 8dffb4ad55f0f9dc79417ebc7a7baed2 |
| genomic_resource.yaml | 2.02 KB | b1cee04009c4dbb27b73564bdf01bd60 |
| statistics/ |