Histone_ChIP-seq_ENCSR691CSS
Histone_ChIP-seq ENCSR691CSS [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive male adult (42 years)" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR691CSS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR691CSS [biosamplesummary="Homo sapiens common myeloid progenitor, CD34-positive male adult (42 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (42 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN667AFZ|/analyses/ENCAN667AFZ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN667AFZ|/analyses/ENCAN667AFZ/} has in progress subobject document {2126e1dd-6ca9-4c36-ab54-d320f43b674d|/documents/2126e1dd-6ca9-4c36-ab54-d320f43b674d/} audit_not_compliant: Processed alignments file {ENCFF990AAG|/files/ENCFF990AAG/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 28948585 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF990AAG|/files/ENCFF990AAG/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF990AAG|/files/ENCFF990AAG/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.72. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR691CSS | float |
Histone_ChIP-seq_ENCSR691CSS |
Histone_ChIP-seq ENCSR691CSS [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive male adult (42 years)" and target="H3K4me1"]
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[1.88, 39.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF536UXR.bed.gz | 3.61 MB | 7ec831f79d7e346dac5520e7cea3eb43 |
| ENCFF536UXR.bed.gz.dvc | 101.0 B | fe92bbcc5ee22b734c16570ff87dab80 |
| ENCFF536UXR.tabix.bed.gz | 1.71 MB | fb4d0ba3050c82b89072b4d5569090aa |
| ENCFF536UXR.tabix.bed.gz.dvc | 107.0 B | 1ae083917113ff4474a7e84185d40fa9 |
| ENCFF536UXR.tabix.bed.gz.tbi | 369.23 KB | 7aa82eedb137ef63fde6e33f267a59b0 |
| ENCFF536UXR.tabix.bed.gz.tbi.dvc | 110.0 B | a6bdf2d27cdc23a375d1934450a3d58d |
| genomic_resource.yaml | 3.54 KB | f976ff9289fba7cfd690478ebac0b3d7 |
| genomic_resource_original.yaml | 3.38 KB | 6e1c527229b042c456c87e9d3eabd1d2 |
| statistics/ |