Resource
| Id | Histone_ChIP-seq/ENCSR687MPF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR687MPF [biosample_summary="Homo sapiens BLaER1 168 hours after the\ \ sample was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10\ \ ng/mL CSF1" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: 168 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1 output_type: peaks audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-joint-replicate-peak-calling-step-v-1|/analysis-steps/crg-chip-seq-joint-replicate-peak-calling-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-alignment-and-filtering-step-v-1|/analysis-steps/crg-chip-seq-alignment-and-filtering-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-bed-to-bigbed-conversion-step-v-1|/analysis-steps/crg-chip-seq-bed-to-bigbed-conversion-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} audit_internal_action: Released analysis step version {crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0|/analysis-step-versions/crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR687MPF | float |
Histone_ChIP-seq_ENCSR687MPF |
Histone_ChIP-seq ENCSR687MPF [biosample_summary="Homo sapiens BLaER1 168 hours after the\ \ sample was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10\ \ ng/mL CSF1" and target="H3K36me3"]
|
 |
[1.4, 16.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 193419044 | 6.01% | 232917 |
| chr1 | 18132441 | 7.28% | 21832 |
| chr1_KI270711v1_random | 5923 | 14.03% | 7 |
| chr2 | 14537825 | 6.00% | 19632 |
| chr3 | 11590984 | 5.85% | 15237 |
| chr4 | 7429526 | 3.91% | 10728 |
| chr5 | 10200982 | 5.62% | 13393 |
| chr6 | 8184316 | 4.79% | 11372 |
| chr7 | 10372121 | 6.51% | 12805 |
| chr8 | 9421547 | 6.49% | 10885 |
| chr9 | 8169999 | 5.90% | 9586 |
| chr10 | 8752739 | 6.54% | 11163 |
| chr11 | 9199290 | 6.81% | 10438 |
| chr12 | 9891753 | 7.42% | 11499 |
| chr13 | 3645430 | 3.19% | 5295 |
| chr14 | 6252485 | 5.84% | 7952 |
| chr14_GL000194v1_random | 3225 | 1.68% | 5 |
| chr15 | 7060793 | 6.92% | 8747 |
| chr16 | 9333388 | 10.33% | 9157 |
| chr17 | 10608596 | 12.74% | 10998 |
| chr17_GL000205v2_random | 5633 | 3.04% | 7 |
| chr18 | 3248327 | 4.04% | 4697 |
| chr19 | 11712136 | 19.98% | 9580 |
| chr20 | 5610687 | 8.71% | 5870 |
| chr21 | 2418400 | 5.18% | 2719 |
| chr22 | 4746152 | 9.34% | 4526 |
| chr22_KI270738v1_random | 250 | 0.25% | 1 |
| chrUn_GL000195v1 | 1741 | 0.95% | 5 |
| chrUn_GL000219v1 | 19608 | 10.94% | 27 |
| chrUn_GL000224v1 | 975 | 0.54% | 2 |
| chrUn_KI270438v1 | 2305 | 2.05% | 4 |
| chrUn_KI270442v1 | 520 | 0.13% | 2 |
| chrUn_KI270518v1 | 265 | 12.12% | 1 |
| chrUn_KI270519v1 | 545 | 0.39% | 1 |
| chrUn_KI270742v1 | 253 | 0.14% | 1 |
| chrUn_KI270744v1 | 453 | 0.27% | 1 |
| chrX | 2856999 | 1.83% | 4741 |
| chrY | 432 | <0.01% | 1 |
| 3329 contigs with no values (127016564 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 232917 | 250 | 58429 | 830.42 | 481 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF755ZPR.bed.gz | 4.29 MB | b383e34ab9f2a6b18ec82a0bf6e0f952 |
| ENCFF755ZPR.tabix.bed.gz | 2.15 MB | 05d54df88abf0309950620c83e3b7406 |
| ENCFF755ZPR.tabix.bed.gz.tbi | 254.71 KB | cab07a07abb0bac8c8c28cac72837956 |
| genomic_resource.yaml | 3.13 KB | 6ec33dda44b7723a10b1650425b96053 |
| statistics/ |